CircRNA Information

General Information
circRNA Basic Information
CircID chr11:9506596|9506731
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGATCATTAGCCAATCTTTTCTTCCAGCCCAGACCCACCTCTTAGGTCAGACCAACATTTATAACTGCATACTCTCTCTACTTCAATTATTCTCAAAACAGTCTACTAAAAGACCTGGGGAGCTTTAAATACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:9506596|9506731 hsa-miR-192-5p 0 0 1
chr11:9506596|9506731 hsa-miR-192-3p 0 0 1
chr11:9506596|9506731 hsa-miR-215-5p 0 0 1
chr11:9506596|9506731 hsa-miR-215-3p 0 0 1
chr11:9506596|9506731 hsa-miR-320a-5p 0 0 1
chr11:9506596|9506731 hsa-miR-320a-3p 0 0 1
chr11:9506596|9506731 hsa-miR-383-5p 0 0 1
chr11:9506596|9506731 hsa-miR-383-3p 0 0 1
chr11:9506596|9506731 hsa-miR-340-5p 0 0 1
chr11:9506596|9506731 hsa-miR-340-3p 0 0 1
chr11:9506596|9506731 hsa-miR-452-5p 0 0 1
chr11:9506596|9506731 hsa-miR-452-3p 0 0 1
chr11:9506596|9506731 hsa-miR-573 0 0 1
chr11:9506596|9506731 hsa-miR-580-5p 0 0 1
chr11:9506596|9506731 hsa-miR-580-3p 0 0 1
chr11:9506596|9506731 hsa-miR-612 1 0 1
chr11:9506596|9506731 hsa-miR-411-5p 0 0 1
chr11:9506596|9506731 hsa-miR-411-3p 0 0 1
chr11:9506596|9506731 hsa-miR-193a-5p 1 0 1
chr11:9506596|9506731 hsa-miR-409-3p 0 0 1
chr11:9506596|9506731 hsa-miR-320b 0 0 1
chr11:9506596|9506731 hsa-miR-320c 0 0 1
chr11:9506596|9506731 hsa-miR-320d 0 0 1
chr11:9506596|9506731 hsa-miR-7 0 0 1
chr11:9506596|9506731 hsa-miR-1300 0 0 1
chr11:9506596|9506731 hsa-miR-1285 0 0 1
chr11:9506596|9506731 hsa-miR-151-3p 0 0 1
chr11:9506596|9506731 hsa-miR-595 1 0 0
chr11:9506596|9506731 hsa-miR-601 1 0 0
chr11:9506596|9506731 hsa-miR-608 1 0 0
chr11:9506596|9506731 hsa-miR-648 1 0 0
chr11:9506596|9506731 hsa-miR-762 1 0 0
chr11:9506596|9506731 hsa-miR-760 1 0 0
chr11:9506596|9506731 hsa-miR-936 1 0 0
chr11:9506596|9506731 hsa-miR-1231 1 0 0
chr11:9506596|9506731 hsa-miR-2861 1 0 0
chr11:9506596|9506731 hsa-miR-3138 1 0 0
chr11:9506596|9506731 hsa-miR-3175 1 0 0
chr11:9506596|9506731 hsa-miR-4306 1 0 0
chr11:9506596|9506731 hsa-miR-4256 0 1 0
chr11:9506596|9506731 hsa-miR-4257 1 0 0
chr11:9506596|9506731 hsa-miR-4259 1 0 0
chr11:9506596|9506731 hsa-miR-4270 1 0 0
chr11:9506596|9506731 hsa-miR-3652 1 0 0
chr11:9506596|9506731 hsa-miR-378g 1 1 0
chr11:9506596|9506731 hsa-miR-4430 1 0 0
chr11:9506596|9506731 hsa-miR-4458 1 0 0
chr11:9506596|9506731 hsa-miR-3135b 1 0 0
chr11:9506596|9506731 hsa-miR-4465 1 0 0
chr11:9506596|9506731 hsa-miR-4486 1 0 0
chr11:9506596|9506731 hsa-miR-4492 1 0 0
chr11:9506596|9506731 hsa-miR-4498 1 1 0
chr11:9506596|9506731 hsa-miR-4505 1 0 0
chr11:9506596|9506731 hsa-miR-4506 1 0 0
chr11:9506596|9506731 hsa-miR-4507 1 0 0
chr11:9506596|9506731 hsa-miR-4510 1 0 0
chr11:9506596|9506731 hsa-miR-1587 1 0 0
chr11:9506596|9506731 hsa-miR-4648 1 0 0
chr11:9506596|9506731 hsa-miR-4651 1 0 0
chr11:9506596|9506731 hsa-miR-4656 1 0 0
chr11:9506596|9506731 hsa-miR-4658 1 0 0
chr11:9506596|9506731 hsa-miR-4706 1 0 0
chr11:9506596|9506731 hsa-miR-4741 1 0 0
chr11:9506596|9506731 hsa-miR-4748 1 0 0
chr11:9506596|9506731 hsa-miR-5186 0 1 0
chr11:9506596|9506731 hsa-miR-5192 1 0 0
chr11:9506596|9506731 hsa-miR-5739 1 0 0
chr11:9506596|9506731 hsa-miR-5787 1 0 0
chr11:9506596|9506731 hsa-miR-6086 1 0 0
chr11:9506596|9506731 hsa-miR-6127 1 0 0
chr11:9506596|9506731 hsa-miR-6133 1 0 0
chr11:9506596|9506731 hsa-miR-6745 1 0 0
chr11:9506596|9506731 hsa-miR-6860 1 0 0
chr11:9506596|9506731 hsa-miR-8085 1 0 0
chr11:9506596|9506731 hsa-miR-12115 1 0 0
chr11:9506596|9506731 hsa-miR-4433b-3p 1 0 0
chr11:9506596|9506731 hsa-miR-6861-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6894-5p 1 0 0
chr11:9506596|9506731 hsa-miR-4687-3p 1 0 0
chr11:9506596|9506731 hsa-miR-6728-5p 1 0 0
chr11:9506596|9506731 hsa-miR-766-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6804-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6880-5p 1 0 0
chr11:9506596|9506731 hsa-miR-7847-3p 1 0 0
chr11:9506596|9506731 hsa-miR-6746-5p 1 0 0
chr11:9506596|9506731 hsa-miR-4709-3p 1 0 0
chr11:9506596|9506731 hsa-miR-6730-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6748-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6793-5p 1 1 0
chr11:9506596|9506731 hsa-miR-185-3p 1 0 0
chr11:9506596|9506731 hsa-miR-6829-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6760-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6782-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6740-5p 1 1 0
chr11:9506596|9506731 hsa-miR-185-5p 1 0 0
chr11:9506596|9506731 hsa-miR-1229-5p 1 0 0
chr11:9506596|9506731 hsa-miR-1908-5p 1 0 0
chr11:9506596|9506731 hsa-miR-296-3p 1 0 0
chr11:9506596|9506731 hsa-let-7b-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6823-5p 1 0 0
chr11:9506596|9506731 hsa-miR-4732-5p 1 0 0
chr11:9506596|9506731 hsa-miR-4446-3p 1 0 0
chr11:9506596|9506731 hsa-miR-3162-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6802-5p 1 0 0
chr11:9506596|9506731 hsa-let-7g-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6781-5p 1 0 0
chr11:9506596|9506731 hsa-miR-574-5p 1 1 0
chr11:9506596|9506731 hsa-let-7i-5p 1 0 0
chr11:9506596|9506731 hsa-let-7f-5p 1 0 0
chr11:9506596|9506731 hsa-let-7c-5p 1 0 0
chr11:9506596|9506731 hsa-let-7e-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6832-5p 1 1 0
chr11:9506596|9506731 hsa-miR-1207-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6769b-5p 1 1 0
chr11:9506596|9506731 hsa-miR-5001-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6737-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6756-5p 1 1 0
chr11:9506596|9506731 hsa-miR-6769a-5p 1 1 0
chr11:9506596|9506731 hsa-miR-6815-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6819-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6851-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6788-5p 1 1 0
chr11:9506596|9506731 hsa-miR-3620-5p 1 0 0
chr11:9506596|9506731 hsa-miR-5189-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6883-5p 1 0 0
chr11:9506596|9506731 hsa-miR-3187-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6831-5p 1 0 0
chr11:9506596|9506731 hsa-miR-3940-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6758-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6856-5p 1 0 0
chr11:9506596|9506731 hsa-miR-3679-5p 1 0 0
chr11:9506596|9506731 hsa-miR-4747-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6790-5p 1 0 0
chr11:9506596|9506731 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:9506596|9506731
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence LIISQSFLPAQTHLLGQTNIYNCILSLLQLFSKQSTKRPGEL
Nucleotide Sequence CTGATCATTAGCCAATCTTTTCTTCCAGCCCAGACCCACCTCTTAGGTCAGACCAACATTTATAACTGCATACTCTCTCTACTTCAATTATTCTCAAAACAGTCTACTAAAAGACCTGGGGAGCTTTAA
CircID chr11:9506596|9506731
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MRIIEVERVCSYKCWSDLRGGSGLEEKIG
Nucleotide Sequence TTGAGAATAATTGAAGTAGAGAGAGTATGCAGTTATAAATGTTGGTCTGACCTAAGAGGTGGGTCTGGGCTGGAAGAAAAGATTGGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab