CircRNA Information

General Information
circRNA Basic Information
CircID chr12:100159058|100159203
Strand -
CircType exon
Host Gene ENSG00000238105.6;
Algorism CIRI2;
Sequence TGGTTGTGCAGCTCCTCCTCCTCAGAGGTCAGCTGCTGATAGGTGACCACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGATGACCCAGGTACTGGTCCTGCTGCTGCTGCAGACTCTGAGCCTCCTGGCTCTTCAGCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:100159058|100159203 hsa-miR-15a-5p 0 0 1
chr12:100159058|100159203 hsa-miR-15a-3p 0 0 1
chr12:100159058|100159203 hsa-miR-107 0 0 1
chr12:100159058|100159203 hsa-miR-214-5p 0 0 1
chr12:100159058|100159203 hsa-miR-214-3p 0 0 1
chr12:100159058|100159203 hsa-miR-15b-5p 0 0 1
chr12:100159058|100159203 hsa-miR-15b-3p 0 0 1
chr12:100159058|100159203 hsa-miR-195-5p 0 0 1
chr12:100159058|100159203 hsa-miR-195-3p 0 0 1
chr12:100159058|100159203 hsa-miR-424-5p 0 0 1
chr12:100159058|100159203 hsa-miR-424-3p 0 0 1
chr12:100159058|100159203 hsa-miR-497-5p 0 0 1
chr12:100159058|100159203 hsa-miR-497-3p 0 0 1
chr12:100159058|100159203 hsa-miR-558 0 0 1
chr12:100159058|100159203 hsa-miR-588 0 0 1
chr12:100159058|100159203 hsa-miR-619-5p 0 0 1
chr12:100159058|100159203 hsa-miR-619-3p 0 0 1
chr12:100159058|100159203 hsa-miR-646 1 1 1
chr12:100159058|100159203 hsa-miR-765 0 0 1
chr12:100159058|100159203 hsa-miR-708-5p 0 0 1
chr12:100159058|100159203 hsa-miR-708-3p 0 0 1
chr12:100159058|100159203 hsa-miR-665 0 1 1
chr12:100159058|100159203 hsa-miR-922 0 0 1
chr12:100159058|100159203 hsa-miR-663b 0 0 1
chr12:100159058|100159203 hsa-miR-1205 0 0 1
chr12:100159058|100159203 hsa-miR-1286 0 1 1
chr12:100159058|100159203 hsa-miR-770-5p 0 1 1
chr12:100159058|100159203 hsa-miR-299-3p 0 0 1
chr12:100159058|100159203 hsa-miR-1184 0 1 1
chr12:100159058|100159203 hsa-miR-28-5p 0 1 1
chr12:100159058|100159203 hsa-miR-323-5p 0 0 1
chr12:100159058|100159203 hsa-miR-103 0 0 1
chr12:100159058|100159203 hsa-miR-16 0 0 1
chr12:100159058|100159203 hsa-miR-24 0 0 1
chr12:100159058|100159203 hsa-miR-761 0 1 0
chr12:100159058|100159203 hsa-miR-920 0 1 0
chr12:100159058|100159203 hsa-miR-1275 1 0 0
chr12:100159058|100159203 hsa-miR-4294 0 1 0
chr12:100159058|100159203 hsa-miR-4656 1 1 0
chr12:100159058|100159203 hsa-miR-4688 1 0 0
chr12:100159058|100159203 hsa-miR-4739 1 0 0
chr12:100159058|100159203 hsa-miR-12115 0 1 0
chr12:100159058|100159203 hsa-miR-12119 0 1 0
chr12:100159058|100159203 hsa-miR-6861-5p 1 0 0
chr12:100159058|100159203 hsa-miR-7106-5p 1 0 0
chr12:100159058|100159203 hsa-miR-6825-5p 1 0 0
chr12:100159058|100159203 hsa-miR-7851-3p 0 1 0
chr12:100159058|100159203 hsa-miR-7114-5p 1 0 0
chr12:100159058|100159203 hsa-miR-4695-5p 1 0 0
chr12:100159058|100159203 hsa-miR-4709-3p 1 1 0
chr12:100159058|100159203 hsa-miR-4722-5p 1 0 0
chr12:100159058|100159203 hsa-miR-24-3p 0 1 0
chr12:100159058|100159203 hsa-miR-7108-5p 1 0 0
chr12:100159058|100159203 hsa-miR-503-5p 1 1 0
chr12:100159058|100159203 hsa-miR-6798-5p 1 0 0
chr12:100159058|100159203 hsa-miR-6874-5p 0 1 0
chr12:100159058|100159203 hsa-miR-4640-5p 1 0 0
chr12:100159058|100159203 hsa-miR-3160-3p 0 1 0
chr12:100159058|100159203 hsa-miR-6742-3p 0 1 0
chr12:100159058|100159203 hsa-miR-5587-5p 0 1 0
chr12:100159058|100159203 hsa-miR-16-5p 0 1 0
chr12:100159058|100159203 hsa-miR-6726-5p 1 0 0
chr12:100159058|100159203 hsa-miR-6743-5p 1 0 0
chr12:100159058|100159203 hsa-miR-6803-5p 1 0 0
chr12:100159058|100159203 hsa-miR-11181-3p 1 1 0
chr12:100159058|100159203 hsa-miR-7111-5p 1 0 0
chr12:100159058|100159203 hsa-miR-6858-5p 1 1 0
chr12:100159058|100159203 hsa-miR-4646-5p 1 0 0
chr12:100159058|100159203 hsa-miR-33b-3p 0 1 0
chr12:100159058|100159203 hsa-miR-3619-5p 1 1 0
chr12:100159058|100159203 hsa-miR-151a-5p 0 1 0
chr12:100159058|100159203 hsa-miR-6838-5p 1 1 0
chr12:100159058|100159203 hsa-miR-370-5p 0 1 0
chr12:100159058|100159203 hsa-miR-4524a-5p 0 1 0
chr12:100159058|100159203 hsa-miR-4653-5p 0 1 0
chr12:100159058|100159203 hsa-miR-3927-5p 0 1 0
chr12:100159058|100159203 hsa-miR-4712-5p 0 1 0
chr12:100159058|100159203 hsa-miR-452-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:100159058|100159203
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MLIGDHLLLIGGHILLQMTQVLVLLLLQTLSLLALQLH
Nucleotide Sequence CTGCTGATAGGTGACCACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGATGACCCAGGTACTGGTCCTGCTGCTGCTGCAGACTCTGAGCCTCCTGGCTCTTCAGCTCCAC
CircID chr12:100159058|100159203
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MKSQEAQSLQQQQDQYLGHLQQYVATYQQQVVTYQQLTSEEEELHN
Nucleotide Sequence CTGAAGAGCCAGGAGGCTCAGAGTCTGCAGCAGCAGCAGGACCAGTACCTGGGTCATCTGCAGCAGTATGTGGCCACCTATCAGCAGCAGGTGGTCACCTATCAGCAGCTGACCTCTGAGGAGGAGGAGCTGCACAAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab