CircRNA Information

General Information
circRNA Basic Information
CircID chr12:103946902|103947430
Strand +
CircType exon
Host Gene ENSG00000166598.11;
Algorism CIRI2;
Sequence CTTTGCTGTTTCTTCTTCTTCATCTGTTCCCACATCCATTTCTTCATCTTCGTCTTGCTCTGTGTCTTCTGTTGTGTCTTCTGCTGTCTCTTCAGGTTCTTCTTCGGGCTCTTCTTCCACCTTTGCATCAGGGTCAATGTTCAAACTGAGGCGAAGCATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:103946902|103947430 hsa-miR-527 0 0 1
chr12:103946902|103947430 hsa-miR-504-5p 0 0 1
chr12:103946902|103947430 hsa-miR-504-3p 0 0 1
chr12:103946902|103947430 hsa-miR-545-5p 0 0 1
chr12:103946902|103947430 hsa-miR-545-3p 0 0 1
chr12:103946902|103947430 hsa-miR-298 0 0 1
chr12:103946902|103947430 hsa-miR-922 0 1 1
chr12:103946902|103947430 hsa-miR-1281 0 0 1
chr12:103946902|103947430 hsa-miR-1292-5p 0 0 1
chr12:103946902|103947430 hsa-miR-1292-3p 0 0 1
chr12:103946902|103947430 hsa-miR-299-3p 0 0 1
chr12:103946902|103947430 hsa-miR-518a-5p 0 0 1
chr12:103946902|103947430 hsa-miR-548b-3p 0 0 1
chr12:103946902|103947430 hsa-miR-7 0 0 1
chr12:103946902|103947430 hsa-miR-920 1 0 0
chr12:103946902|103947430 hsa-miR-936 1 0 0
chr12:103946902|103947430 hsa-miR-1286 1 1 0
chr12:103946902|103947430 hsa-miR-1291 1 0 0
chr12:103946902|103947430 hsa-miR-1246 1 0 0
chr12:103946902|103947430 hsa-miR-1265 1 0 0
chr12:103946902|103947430 hsa-miR-711 1 0 0
chr12:103946902|103947430 hsa-miR-3125 1 1 0
chr12:103946902|103947430 hsa-miR-3138 1 0 0
chr12:103946902|103947430 hsa-miR-3154 1 0 0
chr12:103946902|103947430 hsa-miR-4298 1 0 0
chr12:103946902|103947430 hsa-miR-4271 1 0 0
chr12:103946902|103947430 hsa-miR-3916 1 1 0
chr12:103946902|103947430 hsa-miR-3936 1 0 0
chr12:103946902|103947430 hsa-miR-4428 1 0 0
chr12:103946902|103947430 hsa-miR-4462 1 0 0
chr12:103946902|103947430 hsa-miR-4484 1 0 0
chr12:103946902|103947430 hsa-miR-4534 1 0 0
chr12:103946902|103947430 hsa-miR-4644 1 0 0
chr12:103946902|103947430 hsa-miR-4657 1 0 0
chr12:103946902|103947430 hsa-miR-4672 1 0 0
chr12:103946902|103947430 hsa-miR-4689 1 0 0
chr12:103946902|103947430 hsa-miR-4739 1 0 0
chr12:103946902|103947430 hsa-miR-6088 1 1 0
chr12:103946902|103947430 hsa-miR-6165 1 0 0
chr12:103946902|103947430 hsa-miR-6745 1 1 0
chr12:103946902|103947430 hsa-miR-6863 1 0 0
chr12:103946902|103947430 hsa-miR-8089 1 0 0
chr12:103946902|103947430 hsa-miR-12114 1 1 0
chr12:103946902|103947430 hsa-miR-12115 1 0 0
chr12:103946902|103947430 hsa-miR-211-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6734-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6747-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6894-5p 1 0 0
chr12:103946902|103947430 hsa-miR-125a-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6833-5p 1 0 0
chr12:103946902|103947430 hsa-miR-4768-3p 1 1 0
chr12:103946902|103947430 hsa-miR-6880-5p 1 1 0
chr12:103946902|103947430 hsa-miR-7847-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6746-5p 1 0 0
chr12:103946902|103947430 hsa-miR-4709-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6730-5p 1 0 0
chr12:103946902|103947430 hsa-miR-3928-3p 1 0 0
chr12:103946902|103947430 hsa-miR-8069 1 0 0
chr12:103946902|103947430 hsa-miR-7845-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6796-5p 1 0 0
chr12:103946902|103947430 hsa-miR-3190-3p 1 1 0
chr12:103946902|103947430 hsa-miR-6770-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6760-5p 1 0 0
chr12:103946902|103947430 hsa-miR-2467-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6810-5p 1 0 0
chr12:103946902|103947430 hsa-miR-345-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6853-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6740-5p 1 0 0
chr12:103946902|103947430 hsa-miR-3691-5p 1 0 0
chr12:103946902|103947430 hsa-miR-4764-5p 0 1 0
chr12:103946902|103947430 hsa-miR-6847-5p 1 1 0
chr12:103946902|103947430 hsa-miR-6878-5p 1 1 0
chr12:103946902|103947430 hsa-miR-6895-5p 1 0 0
chr12:103946902|103947430 hsa-miR-7846-3p 1 0 0
chr12:103946902|103947430 hsa-miR-214-3p 1 0 0
chr12:103946902|103947430 hsa-miR-5197-3p 0 1 0
chr12:103946902|103947430 hsa-miR-5003-5p 0 1 0
chr12:103946902|103947430 hsa-miR-1233-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6769b-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6778-5p 1 1 0
chr12:103946902|103947430 hsa-miR-6865-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6756-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6815-5p 1 0 0
chr12:103946902|103947430 hsa-miR-10401-5p 1 0 0
chr12:103946902|103947430 hsa-miR-1249-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6788-5p 1 1 0
chr12:103946902|103947430 hsa-miR-7111-5p 1 0 0
chr12:103946902|103947430 hsa-miR-4726-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6735-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6795-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6887-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6845-5p 1 0 0
chr12:103946902|103947430 hsa-miR-4769-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6511a-5p 1 0 0
chr12:103946902|103947430 hsa-miR-3679-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6876-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6750-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6766-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6849-5p 1 0 0
chr12:103946902|103947430 hsa-miR-6724-5p 1 0 0
chr12:103946902|103947430 hsa-miR-642a-3p 1 0 0
chr12:103946902|103947430 hsa-miR-6838-5p 1 0 0
chr12:103946902|103947430 hsa-miR-3617-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:103946902|103947430
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MLCVFCCVFCCLFRFFFGLFFHLCIRVNVQTEAKH
Nucleotide Sequence TTGCTCTGTGTCTTCTGTTGTGTCTTCTGCTGTCTCTTCAGGTTCTTCTTCGGGCTCTTCTTCCACCTTTGCATCAGGGTCAATGTTCAAACTGAGGCGAAGCAT
CircID chr12:103946902|103947430
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence LLFLLLHLFPHPFLHLRLALCLLLCLLLSLQVLLRALLPPLHQGQCSN
Nucleotide Sequence TTGCTGTTTCTTCTTCTTCATCTGTTCCCACATCCATTTCTTCATCTTCGTCTTGCTCTGTGTCTTCTGTTGTGTCTTCTGCTGTCTCTTCAGGTTCTTCTTCGGGCTCTTCTTCCACCTTTGCATCAGGGTCAATGTTCAAACTGA
CircID chr12:103946902|103947430
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MLRLSLNIDPDAKVEEEPEEEPEETAEDTTEDTEQDEDEEMDVGTDEEEETAK
Nucleotide Sequence ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAACAGCAAAG
CircID chr12:103946902|103947430
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MTLMQRWKKSPKKNLKRQQKTQQKTQSKTKMKKWMWEQMKKKKQQ
Nucleotide Sequence TTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAACAGCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab