CircRNA Information

General Information
circRNA Basic Information
CircID chr12:107712565|107712766
Strand +
CircType exon
Host Gene ENSG00000136045.10;
Algorism CIRI2;
Sequence AGTGAATATCATGCTAGGAAAACAGGGGCATGTAACTTTTACTTATCAAACTCTACGAGTTGCACTGAGAATACTCAATCATGAGCATTAATTTGAGAACAGTTAGGAATGAAAGTGGAGTCTCTGGGGCACTTGCCTCTGTTCATGGCCTCCTGTGCAATTTTAGCCAAATAACAGCCTTTCCAGGCCTAGGTTTACCTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:107712565|107712766 hsa-miR-25-5p 0 0 1
chr12:107712565|107712766 hsa-miR-25-3p 0 0 1
chr12:107712565|107712766 hsa-miR-32-5p 0 0 1
chr12:107712565|107712766 hsa-miR-32-3p 0 0 1
chr12:107712565|107712766 hsa-miR-148a-5p 0 0 1
chr12:107712565|107712766 hsa-miR-148a-3p 0 0 1
chr12:107712565|107712766 hsa-miR-130a-5p 0 0 1
chr12:107712565|107712766 hsa-miR-130a-3p 0 0 1
chr12:107712565|107712766 hsa-miR-152-5p 0 0 1
chr12:107712565|107712766 hsa-miR-152-3p 0 0 1
chr12:107712565|107712766 hsa-miR-155-5p 0 0 1
chr12:107712565|107712766 hsa-miR-155-3p 0 0 1
chr12:107712565|107712766 hsa-miR-301a-5p 0 0 1
chr12:107712565|107712766 hsa-miR-301a-3p 0 0 1
chr12:107712565|107712766 hsa-miR-130b-5p 0 0 1
chr12:107712565|107712766 hsa-miR-130b-3p 0 0 1
chr12:107712565|107712766 hsa-miR-363-5p 0 0 1
chr12:107712565|107712766 hsa-miR-363-3p 0 0 1
chr12:107712565|107712766 hsa-miR-367-5p 0 0 1
chr12:107712565|107712766 hsa-miR-367-3p 0 0 1
chr12:107712565|107712766 hsa-miR-148b-5p 0 0 1
chr12:107712565|107712766 hsa-miR-148b-3p 0 0 1
chr12:107712565|107712766 hsa-miR-384 0 0 1
chr12:107712565|107712766 hsa-miR-433-5p 0 0 1
chr12:107712565|107712766 hsa-miR-433-3p 0 0 1
chr12:107712565|107712766 hsa-miR-496 0 0 1
chr12:107712565|107712766 hsa-miR-92b-5p 0 0 1
chr12:107712565|107712766 hsa-miR-92b-3p 0 0 1
chr12:107712565|107712766 hsa-miR-630 0 0 1
chr12:107712565|107712766 hsa-miR-454-5p 0 0 1
chr12:107712565|107712766 hsa-miR-454-3p 0 0 1
chr12:107712565|107712766 hsa-miR-1298-5p 0 0 1
chr12:107712565|107712766 hsa-miR-1298-3p 0 0 1
chr12:107712565|107712766 hsa-miR-891b 0 0 1
chr12:107712565|107712766 hsa-miR-301b-5p 0 0 1
chr12:107712565|107712766 hsa-miR-301b-3p 0 0 1
chr12:107712565|107712766 hsa-miR-548n 0 0 1
chr12:107712565|107712766 hsa-miR-513c-5p 0 0 1
chr12:107712565|107712766 hsa-miR-513c-3p 0 0 1
chr12:107712565|107712766 hsa-miR-875-3p 0 0 1
chr12:107712565|107712766 hsa-miR-371-5p 0 0 1
chr12:107712565|107712766 hsa-miR-1274b 0 0 1
chr12:107712565|107712766 hsa-miR-1254 0 0 1
chr12:107712565|107712766 hsa-miR-92a 0 0 1
chr12:107712565|107712766 hsa-miR-4429 1 0 0
chr12:107712565|107712766 hsa-miR-4741 1 0 0
chr12:107712565|107712766 hsa-miR-4687-3p 1 0 0
chr12:107712565|107712766 hsa-miR-6749-5p 1 0 0
chr12:107712565|107712766 hsa-miR-7152-3p 1 0 0
chr12:107712565|107712766 hsa-miR-7107-5p 1 0 0
chr12:107712565|107712766 hsa-miR-6780b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr12:107712565|107712766
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MLGKQGHVTFTYQTLRVALRILNHEH
Nucleotide Sequence ATGCTAGGAAAACAGGGGCATGTAACTTTTACTTATCAAACTCTACGAGTTGCACTGAGAATACTCAATCATGAGCATTAA

CircID chr12:107712565|107712766
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MSINLRTVRNESGVSGALASVHGLLCNFSQITAFPGLGLP
Nucleotide Sequence ATGAGCATTAATTTGAGAACAGTTAGGAATGAAAGTGGAGTCTCTGGGGCACTTGCCTCTGTTCATGGCCTCCTGTGCAATTTTAGCCAAATAACAGCCTTTCCAGGCCTAGGTTTACCT

CircID chr12:107712565|107712766
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MAKIAQEAMNRGKCPRDSTFIPNCSQINAHD
Nucleotide Sequence TTGGCTAAAATTGCACAGGAGGCCATGAACAGAGGCAAGTGCCCCAGAGACTCCACTTTCATTCCTAACTGTTCTCAAATTAATGCTCATGATTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites