CircRNA Information

General Information
circRNA Basic Information
CircID chr12:10886268|10886407
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTTAGGAGGATTTCCTGTTCTTTTCCTGTACTCTGCTGCCAAGGAGAAACCTGTCTTGCACCAGGCCTGCAGCTTCCTCAGTCCCCCACATCATCAGGCAATATCTGCCTGGCACTCCTCTTTGTTCCTTTTCTCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:10886268|10886407 hsa-miR-583 0 1 1
chr12:10886268|10886407 hsa-miR-625-5p 0 0 1
chr12:10886268|10886407 hsa-miR-625-3p 0 0 1
chr12:10886268|10886407 hsa-miR-922 0 1 1
chr12:10886268|10886407 hsa-miR-1205 0 0 1
chr12:10886268|10886407 hsa-miR-1275 1 0 1
chr12:10886268|10886407 hsa-miR-491-5p 0 0 1
chr12:10886268|10886407 hsa-miR-885-3p 1 1 1
chr12:10886268|10886407 hsa-miR-299-3p 0 0 1
chr12:10886268|10886407 hsa-miR-1201 0 0 1
chr12:10886268|10886407 hsa-miR-107 1 0 0
chr12:10886268|10886407 hsa-miR-604 1 0 0
chr12:10886268|10886407 hsa-miR-920 1 0 0
chr12:10886268|10886407 hsa-miR-1183 1 0 0
chr12:10886268|10886407 hsa-miR-1202 1 0 0
chr12:10886268|10886407 hsa-miR-548q 0 1 0
chr12:10886268|10886407 hsa-miR-3125 1 0 0
chr12:10886268|10886407 hsa-miR-3916 1 0 0
chr12:10886268|10886407 hsa-miR-3937 1 0 0
chr12:10886268|10886407 hsa-miR-4466 1 0 0
chr12:10886268|10886407 hsa-miR-4502 0 1 0
chr12:10886268|10886407 hsa-miR-4513 1 0 0
chr12:10886268|10886407 hsa-miR-4514 0 1 0
chr12:10886268|10886407 hsa-miR-4525 1 0 0
chr12:10886268|10886407 hsa-miR-4651 1 0 0
chr12:10886268|10886407 hsa-miR-4656 1 1 0
chr12:10886268|10886407 hsa-miR-4657 1 0 0
chr12:10886268|10886407 hsa-miR-4673 1 1 0
chr12:10886268|10886407 hsa-miR-4696 0 1 0
chr12:10886268|10886407 hsa-miR-4734 1 0 0
chr12:10886268|10886407 hsa-miR-4754 1 0 0
chr12:10886268|10886407 hsa-miR-6085 1 0 0
chr12:10886268|10886407 hsa-miR-6124 1 1 0
chr12:10886268|10886407 hsa-miR-8052 0 1 0
chr12:10886268|10886407 hsa-miR-12119 0 1 0
chr12:10886268|10886407 hsa-miR-12120 0 1 0
chr12:10886268|10886407 hsa-miR-12128 1 1 0
chr12:10886268|10886407 hsa-miR-211-3p 1 0 0
chr12:10886268|10886407 hsa-miR-4433b-3p 0 1 0
chr12:10886268|10886407 hsa-miR-504-3p 1 1 0
chr12:10886268|10886407 hsa-miR-671-5p 1 0 0
chr12:10886268|10886407 hsa-miR-212-5p 0 1 0
chr12:10886268|10886407 hsa-miR-6857-5p 1 0 0
chr12:10886268|10886407 hsa-miR-7847-3p 1 0 0
chr12:10886268|10886407 hsa-miR-4695-5p 1 0 0
chr12:10886268|10886407 hsa-miR-7160-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6806-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6742-5p 1 0 0
chr12:10886268|10886407 hsa-miR-3151-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6796-5p 1 1 0
chr12:10886268|10886407 hsa-miR-2467-3p 1 0 0
chr12:10886268|10886407 hsa-miR-5006-5p 0 1 0
chr12:10886268|10886407 hsa-miR-7109-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6847-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6834-5p 1 0 0
chr12:10886268|10886407 hsa-miR-103a-3p 1 0 0
chr12:10886268|10886407 hsa-miR-4684-3p 1 0 0
chr12:10886268|10886407 hsa-miR-3191-3p 1 0 0
chr12:10886268|10886407 hsa-miR-4652-5p 0 1 0
chr12:10886268|10886407 hsa-miR-4524b-3p 0 1 0
chr12:10886268|10886407 hsa-miR-4763-3p 1 0 0
chr12:10886268|10886407 hsa-miR-6870-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6726-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6756-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6803-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6813-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6819-5p 1 0 0
chr12:10886268|10886407 hsa-miR-10401-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6751-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6788-5p 1 0 0
chr12:10886268|10886407 hsa-miR-7111-5p 1 0 0
chr12:10886268|10886407 hsa-miR-1237-5p 1 0 0
chr12:10886268|10886407 hsa-miR-328-5p 1 1 0
chr12:10886268|10886407 hsa-miR-4745-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6777-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6794-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6795-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6848-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6858-5p 1 1 0
chr12:10886268|10886407 hsa-miR-6887-5p 1 0 0
chr12:10886268|10886407 hsa-miR-939-5p 1 0 0
chr12:10886268|10886407 hsa-miR-1910-3p 0 1 0
chr12:10886268|10886407 hsa-miR-365b-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6511a-5p 1 1 0
chr12:10886268|10886407 hsa-miR-4665-5p 1 1 0
chr12:10886268|10886407 hsa-miR-10394-5p 1 1 0
chr12:10886268|10886407 hsa-miR-3619-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6838-5p 1 0 0
chr12:10886268|10886407 hsa-miR-6811-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:10886268|10886407
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MFFSCTLLPRRNLSCTRPAASSVPHIIRQYLPGTPLCSFSL
Nucleotide Sequence CTGTTCTTTTCCTGTACTCTGCTGCCAAGGAGAAACCTGTCTTGCACCAGGCCTGCAGCTTCCTCAGTCCCCCACATCATCAGGCAATATCTGCCTGGCACTCCTCTTTGTTCCTTTTCTCTG
CircID chr12:10886268|10886407
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MYSAAKEKPVLHQACSFLSPPHHQAISAWHSSLFLFSD
Nucleotide Sequence CTGTACTCTGCTGCCAAGGAGAAACCTGTCTTGCACCAGGCCTGCAGCTTCCTCAGTCCCCCACATCATCAGGCAATATCTGCCTGGCACTCCTCTTTGTTCCTTTTCTCTGAC
CircID chr12:10886268|10886407
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MMMWGTEEAAGLVQDRFLLGSRVQEKNRKSS
Nucleotide Sequence CTGATGATGTGGGGGACTGAGGAAGCTGCAGGCCTGGTGCAAGACAGGTTTCTCCTTGGCAGCAGAGTACAGGAAAAGAACAGGAAATCCTCCTAA
CircID chr12:10886268|10886407
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MRKLQAWCKTGFSLAAEYRKRTGNPPK
Nucleotide Sequence CTGAGGAAGCTGCAGGCCTGGTGCAAGACAGGTTTCTCCTTGGCAGCAGAGTACAGGAAAAGAACAGGAAATCCTCCTAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab