CircRNA Information

General Information
circRNA Basic Information
CircID chr12:109085842|109086134
Strand +
CircType exon
Host Gene ENSG00000135093.11;
Algorism CIRI2;
Sequence CACCTACACACATGAACAGGACTGTTCAGGGAGCCTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:109085842|109086134 hsa-miR-19a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-19a-3p 0 0 1
chr12:109085842|109086134 hsa-miR-29a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-29a-3p 0 0 1
chr12:109085842|109086134 hsa-miR-107 0 0 1
chr12:109085842|109086134 hsa-miR-198 0 0 1
chr12:109085842|109086134 hsa-miR-183-5p 0 0 1
chr12:109085842|109086134 hsa-miR-183-3p 0 0 1
chr12:109085842|109086134 hsa-miR-212-5p 0 0 1
chr12:109085842|109086134 hsa-miR-212-3p 0 0 1
chr12:109085842|109086134 hsa-miR-130a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-130a-3p 0 0 1
chr12:109085842|109086134 hsa-miR-132-5p 0 0 1
chr12:109085842|109086134 hsa-miR-132-3p 0 0 1
chr12:109085842|109086134 hsa-miR-29c-5p 0 0 1
chr12:109085842|109086134 hsa-miR-29c-3p 0 0 1
chr12:109085842|109086134 hsa-miR-301a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-301a-3p 0 0 1
chr12:109085842|109086134 hsa-miR-130b-5p 0 0 1
chr12:109085842|109086134 hsa-miR-130b-3p 0 0 1
chr12:109085842|109086134 hsa-miR-370-5p 0 0 1
chr12:109085842|109086134 hsa-miR-370-3p 0 0 1
chr12:109085842|109086134 hsa-miR-377-5p 0 0 1
chr12:109085842|109086134 hsa-miR-377-3p 0 0 1
chr12:109085842|109086134 hsa-miR-346 0 0 1
chr12:109085842|109086134 hsa-miR-452-5p 0 0 1
chr12:109085842|109086134 hsa-miR-452-3p 0 0 1
chr12:109085842|109086134 hsa-miR-484 0 1 1
chr12:109085842|109086134 hsa-miR-559 0 0 1
chr12:109085842|109086134 hsa-miR-632 0 0 1
chr12:109085842|109086134 hsa-miR-454-5p 0 0 1
chr12:109085842|109086134 hsa-miR-454-3p 0 0 1
chr12:109085842|109086134 hsa-miR-766-5p 0 0 1
chr12:109085842|109086134 hsa-miR-766-3p 0 0 1
chr12:109085842|109086134 hsa-miR-665 1 0 1
chr12:109085842|109086134 hsa-miR-301b-5p 0 0 1
chr12:109085842|109086134 hsa-miR-301b-3p 0 0 1
chr12:109085842|109086134 hsa-miR-920 0 0 1
chr12:109085842|109086134 hsa-miR-943 0 1 1
chr12:109085842|109086134 hsa-miR-1228-5p 0 0 1
chr12:109085842|109086134 hsa-miR-1228-3p 0 0 1
chr12:109085842|109086134 hsa-miR-1237-5p 0 0 1
chr12:109085842|109086134 hsa-miR-1237-3p 0 0 1
chr12:109085842|109086134 hsa-miR-1206 0 0 1
chr12:109085842|109086134 hsa-miR-548e-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548e-3p 0 0 1
chr12:109085842|109086134 hsa-miR-548j-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548j-3p 0 0 1
chr12:109085842|109086134 hsa-miR-548g-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548g-3p 0 0 1
chr12:109085842|109086134 hsa-miR-548n 0 0 1
chr12:109085842|109086134 hsa-miR-125a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548b-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548d-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548a-3p 0 0 1
chr12:109085842|109086134 hsa-miR-548c-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548a-5p 0 0 1
chr12:109085842|109086134 hsa-miR-548i 0 0 1
chr12:109085842|109086134 hsa-miR-125b 0 0 1
chr12:109085842|109086134 hsa-miR-103 0 0 1
chr12:109085842|109086134 hsa-miR-548f 0 0 1
chr12:109085842|109086134 hsa-miR-19b 0 0 1
chr12:109085842|109086134 hsa-miR-220a 0 0 1
chr12:109085842|109086134 hsa-miR-29b 0 0 1
chr12:109085842|109086134 hsa-miR-548h 0 0 1
chr12:109085842|109086134 hsa-miR-892a 0 1 0
chr12:109085842|109086134 hsa-miR-1203 1 1 0
chr12:109085842|109086134 hsa-miR-3155a 0 1 0
chr12:109085842|109086134 hsa-miR-4297 0 1 0
chr12:109085842|109086134 hsa-miR-3650 0 1 0
chr12:109085842|109086134 hsa-miR-3909 0 1 0
chr12:109085842|109086134 hsa-miR-3155b 0 1 0
chr12:109085842|109086134 hsa-miR-4741 1 0 0
chr12:109085842|109086134 hsa-miR-8075 1 1 0
chr12:109085842|109086134 hsa-miR-12126 0 1 0
chr12:109085842|109086134 hsa-miR-4433b-3p 0 1 0
chr12:109085842|109086134 hsa-miR-504-3p 0 1 0
chr12:109085842|109086134 hsa-miR-4433a-3p 0 1 0
chr12:109085842|109086134 hsa-miR-6720-5p 1 1 0
chr12:109085842|109086134 hsa-miR-486-5p 1 0 0
chr12:109085842|109086134 hsa-miR-7851-3p 0 1 0
chr12:109085842|109086134 hsa-miR-3192-5p 0 1 0
chr12:109085842|109086134 hsa-miR-505-5p 0 1 0
chr12:109085842|109086134 hsa-miR-874-5p 0 1 0
chr12:109085842|109086134 hsa-miR-4793-3p 0 1 0
chr12:109085842|109086134 hsa-miR-6765-3p 0 1 0
chr12:109085842|109086134 hsa-miR-3194-5p 0 1 0
chr12:109085842|109086134 hsa-miR-6858-3p 0 1 0
chr12:109085842|109086134 hsa-miR-2276-3p 0 1 0
chr12:109085842|109086134 hsa-miR-339-5p 0 1 0
chr12:109085842|109086134 hsa-miR-3065-3p 0 1 0
chr12:109085842|109086134 hsa-miR-6889-3p 0 1 0
chr12:109085842|109086134 hsa-miR-7106-3p 0 1 0
chr12:109085842|109086134 hsa-miR-660-3p 0 1 0
chr12:109085842|109086134 hsa-miR-4732-3p 1 1 0
chr12:109085842|109086134 hsa-miR-1910-5p 0 1 0
chr12:109085842|109086134 hsa-miR-6715a-3p 0 1 0
chr12:109085842|109086134 hsa-miR-3614-3p 0 1 0
chr12:109085842|109086134 hsa-miR-7113-5p 1 0 0
chr12:109085842|109086134 hsa-miR-4746-5p 0 1 0
chr12:109085842|109086134 hsa-miR-6748-3p 0 1 0
chr12:109085842|109086134 hsa-miR-7152-5p 0 1 0
chr12:109085842|109086134 hsa-miR-6838-3p 0 1 0
chr12:109085842|109086134 hsa-miR-4685-5p 1 1 0
chr12:109085842|109086134 hsa-miR-6792-3p 0 1 0
chr12:109085842|109086134 hsa-miR-6837-5p 0 1 0
chr12:109085842|109086134 hsa-miR-10392-3p 0 1 0
chr12:109085842|109086134 hsa-miR-6512-3p 0 1 0
chr12:109085842|109086134 hsa-miR-5581-5p 0 1 0
chr12:109085842|109086134 hsa-miR-4691-5p 0 1 0
chr12:109085842|109086134 hsa-miR-10524-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:109085842|109086134
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MHTQQYSFTFFLDSADSAISSSLAGGHSHSSDLHSWLWCCILERTRS
Nucleotide Sequence TTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAG
CircID chr12:109085842|109086134
ORF Type ORF2
Protein Length 86
Nucleotide Length 258
Protein Sequence MVWCELGLAPRWSLLLEHTRRLEGSSGAACTRNSTVLLFSWTVQTVPSALALQEGTVILQTCTPGSGAASWKGRARRTAGRRWRTG
Nucleotide Sequence CTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGA
CircID chr12:109085842|109086134
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSSSAYLLFYERVLSRMQHQSQECKSEE
Nucleotide Sequence CTGTCCTCCAGCGCCTACCTGCTGTTCTACGAGCGCGTCCTTTCCAGGATGCAGCACCAGAGCCAGGAGTGCAAGTCTGAAGAATGA
CircID chr12:109085842|109086134
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MCPPARLELMALSALSRKKVKLYCCVCKRPH
Nucleotide Sequence CTGTGCCCTCCTGCAAGGCTAGAGCTGATGGCACTGTCTGCACTGTCCAGGAAAAAAGTAAAACTGTACTGTTGCGTGTGCAAGCGGCCCCACTAG
CircID chr12:109085842|109086134
ORF Type ORF5
Protein Length 67
Nucleotide Length 204
Protein Sequence MTVPSCKARADGTVCTVQEKSKTVLLRVQAAPLEPSSLLVCSKSRLHLGASPSSHQTRLPEQSCSCV
Nucleotide Sequence ATGACTGTGCCCTCCTGCAAGGCTAGAGCTGATGGCACTGTCTGCACTGTCCAGGAAAAAAGTAAAACTGTACTGTTGCGTGTGCAAGCGGCCCCACTAGAGCCTTCCAGCCTTCTGGTGTGTTCTAAGAGCAGGCTCCACCTGGGAGCCAGCCCCAGTTCACACCAAACCAGGCTCCCTGAACAGTCCTGTTCATGTGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab