CircRNA Information

General Information
circRNA Basic Information
CircID chr12:109110213|109110384
Strand -
CircType exon
Host Gene ENSG00000076248.9;
Algorism CIRI2;
Sequence AGATGAGGTCAAATACTCAGTTGGCTCTCTTTATCTCCCTTGCCTTTATGGTGAAACAGGGGAGATGTGCACCTTTCAGGCACAGCCCTAGTTTGGCGCCTGCTGCTCCTTGGTTTTGCCTGGTTAGACTTTCAGTGACAGATGTTGGGGTGTTTTTGCTTAGAAAGGTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:109110213|109110384 hsa-miR-15a-5p 0 0 1
chr12:109110213|109110384 hsa-miR-15a-3p 0 0 1
chr12:109110213|109110384 hsa-miR-18a-5p 0 0 1
chr12:109110213|109110384 hsa-miR-18a-3p 0 0 1
chr12:109110213|109110384 hsa-miR-192-5p 0 0 1
chr12:109110213|109110384 hsa-miR-192-3p 0 0 1
chr12:109110213|109110384 hsa-miR-197-5p 0 0 1
chr12:109110213|109110384 hsa-miR-197-3p 0 0 1
chr12:109110213|109110384 hsa-miR-214-5p 0 0 1
chr12:109110213|109110384 hsa-miR-214-3p 0 0 1
chr12:109110213|109110384 hsa-miR-215-5p 0 0 1
chr12:109110213|109110384 hsa-miR-215-3p 0 0 1
chr12:109110213|109110384 hsa-miR-15b-5p 0 0 1
chr12:109110213|109110384 hsa-miR-15b-3p 0 0 1
chr12:109110213|109110384 hsa-miR-195-5p 0 0 1
chr12:109110213|109110384 hsa-miR-195-3p 0 0 1
chr12:109110213|109110384 hsa-miR-424-5p 0 0 1
chr12:109110213|109110384 hsa-miR-424-3p 0 0 1
chr12:109110213|109110384 hsa-miR-18b-5p 0 0 1
chr12:109110213|109110384 hsa-miR-18b-3p 0 0 1
chr12:109110213|109110384 hsa-miR-488-5p 0 0 1
chr12:109110213|109110384 hsa-miR-488-3p 0 0 1
chr12:109110213|109110384 hsa-miR-496 0 0 1
chr12:109110213|109110384 hsa-miR-497-5p 0 0 1
chr12:109110213|109110384 hsa-miR-497-3p 0 0 1
chr12:109110213|109110384 hsa-miR-577 0 0 1
chr12:109110213|109110384 hsa-miR-583 0 0 1
chr12:109110213|109110384 hsa-miR-668-5p 0 0 1
chr12:109110213|109110384 hsa-miR-668-3p 0 0 1
chr12:109110213|109110384 hsa-miR-1276 0 0 1
chr12:109110213|109110384 hsa-miR-548p 0 0 1
chr12:109110213|109110384 hsa-miR-331-3p 0 0 1
chr12:109110213|109110384 hsa-miR-576-5p 0 0 1
chr12:109110213|109110384 hsa-miR-550 0 0 1
chr12:109110213|109110384 hsa-miR-1274b 0 0 1
chr12:109110213|109110384 hsa-miR-16 0 0 1
chr12:109110213|109110384 hsa-miR-1201 0 0 1
chr12:109110213|109110384 hsa-miR-1323 0 1 0
chr12:109110213|109110384 hsa-miR-761 0 1 0
chr12:109110213|109110384 hsa-miR-4311 0 1 0
chr12:109110213|109110384 hsa-miR-4270 1 0 0
chr12:109110213|109110384 hsa-miR-4514 1 0 0
chr12:109110213|109110384 hsa-miR-4673 1 1 0
chr12:109110213|109110384 hsa-miR-4675 0 1 0
chr12:109110213|109110384 hsa-miR-4688 1 0 0
chr12:109110213|109110384 hsa-miR-4741 0 1 0
chr12:109110213|109110384 hsa-miR-5090 1 0 0
chr12:109110213|109110384 hsa-miR-6081 0 1 0
chr12:109110213|109110384 hsa-miR-8063 0 1 0
chr12:109110213|109110384 hsa-miR-6809-5p 0 1 0
chr12:109110213|109110384 hsa-miR-6510-5p 1 0 0
chr12:109110213|109110384 hsa-miR-4722-5p 1 0 0
chr12:109110213|109110384 hsa-miR-6760-5p 0 1 0
chr12:109110213|109110384 hsa-miR-6753-5p 1 0 0
chr12:109110213|109110384 hsa-miR-4690-5p 1 1 0
chr12:109110213|109110384 hsa-miR-659-5p 0 1 0
chr12:109110213|109110384 hsa-miR-550b-2-5p 0 1 0
chr12:109110213|109110384 hsa-miR-6793-3p 0 1 0
chr12:109110213|109110384 hsa-miR-6773-3p 0 1 0
chr12:109110213|109110384 hsa-miR-7844-5p 0 1 0
chr12:109110213|109110384 hsa-miR-365a-5p 0 1 0
chr12:109110213|109110384 hsa-miR-6511a-5p 1 0 0
chr12:109110213|109110384 hsa-miR-1271-3p 0 1 0
chr12:109110213|109110384 hsa-miR-6753-3p 1 0 0
chr12:109110213|109110384 hsa-miR-550a-3-5p 0 1 0
chr12:109110213|109110384 hsa-miR-550a-5p 0 1 0
chr12:109110213|109110384 hsa-miR-3619-5p 0 1 0
chr12:109110213|109110384 hsa-miR-6838-5p 0 1 0
chr12:109110213|109110384 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:109110213|109110384
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MRSNTQLALFISLAFMVKQGRCAPFRHSPSLAPAAPWFCLVRLSVTDVGVFLLRKV
Nucleotide Sequence ATGAGGTCAAATACTCAGTTGGCTCTCTTTATCTCCCTTGCCTTTATGGTGAAACAGGGGAGATGTGCACCTTTCAGGCACAGCCCTAGTTTGGCGCCTGCTGCTCCTTGGTTTTGCCTGGTTAGACTTTCAGTGACAGATGTTGGGGTGTTTTTGCTTAGAAAGGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab