CircRNA Information

General Information
circRNA Basic Information
CircID chr12:109110270|109110466
Strand -
CircType exon
Host Gene ENSG00000076248.9;
Algorism CIRI2;
Sequence AGGGGAGATGTGCACCTTTCAGGCACAGCCCTAGTTTGGCGCCTGCTGCTCCTTGGTTTTGCCTGGTTAGACTTTCAGTGACAGATGTTGGGGTGTTTTTGCTTAGAAAGGTCCCCTTGTCTCAGCCTTGCAGGGCAGGCATGCCAGTCTCTGCCAGTTCCACTGCCCCCTTGATCTTTGAAGGAGTCCTCAGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:109110270|109110466 hsa-miR-15a-5p 0 0 1
chr12:109110270|109110466 hsa-miR-15a-3p 0 0 1
chr12:109110270|109110466 hsa-miR-18a-5p 0 0 1
chr12:109110270|109110466 hsa-miR-18a-3p 0 0 1
chr12:109110270|109110466 hsa-miR-34a-5p 0 0 1
chr12:109110270|109110466 hsa-miR-34a-3p 0 0 1
chr12:109110270|109110466 hsa-miR-205-5p 0 0 1
chr12:109110270|109110466 hsa-miR-205-3p 0 0 1
chr12:109110270|109110466 hsa-miR-214-5p 0 0 1
chr12:109110270|109110466 hsa-miR-214-3p 0 0 1
chr12:109110270|109110466 hsa-miR-15b-5p 0 0 1
chr12:109110270|109110466 hsa-miR-15b-3p 0 0 1
chr12:109110270|109110466 hsa-miR-195-5p 0 0 1
chr12:109110270|109110466 hsa-miR-195-3p 0 0 1
chr12:109110270|109110466 hsa-miR-424-5p 0 0 1
chr12:109110270|109110466 hsa-miR-424-3p 0 0 1
chr12:109110270|109110466 hsa-miR-18b-5p 0 0 1
chr12:109110270|109110466 hsa-miR-18b-3p 0 0 1
chr12:109110270|109110466 hsa-miR-449a 0 1 1
chr12:109110270|109110466 hsa-miR-488-5p 0 0 1
chr12:109110270|109110466 hsa-miR-488-3p 0 0 1
chr12:109110270|109110466 hsa-miR-497-5p 0 0 1
chr12:109110270|109110466 hsa-miR-497-3p 0 0 1
chr12:109110270|109110466 hsa-miR-449b-5p 0 0 1
chr12:109110270|109110466 hsa-miR-449b-3p 0 0 1
chr12:109110270|109110466 hsa-miR-668-5p 0 0 1
chr12:109110270|109110466 hsa-miR-668-3p 0 0 1
chr12:109110270|109110466 hsa-miR-874-5p 0 0 1
chr12:109110270|109110466 hsa-miR-874-3p 0 0 1
chr12:109110270|109110466 hsa-miR-548p 0 0 1
chr12:109110270|109110466 hsa-miR-1224-5p 1 1 1
chr12:109110270|109110466 hsa-miR-486-3p 0 0 1
chr12:109110270|109110466 hsa-miR-146b-3p 0 0 1
chr12:109110270|109110466 hsa-miR-576-5p 0 0 1
chr12:109110270|109110466 hsa-miR-34c-5p 0 1 1
chr12:109110270|109110466 hsa-miR-550 0 0 1
chr12:109110270|109110466 hsa-miR-16 0 0 1
chr12:109110270|109110466 hsa-miR-1201 0 0 1
chr12:109110270|109110466 hsa-miR-1323 0 1 0
chr12:109110270|109110466 hsa-miR-762 1 0 0
chr12:109110270|109110466 hsa-miR-761 0 1 0
chr12:109110270|109110466 hsa-miR-2861 1 0 0
chr12:109110270|109110466 hsa-miR-3131 1 0 0
chr12:109110270|109110466 hsa-miR-4270 1 0 0
chr12:109110270|109110466 hsa-miR-3929 0 1 0
chr12:109110270|109110466 hsa-miR-3936 1 0 0
chr12:109110270|109110466 hsa-miR-4478 0 1 0
chr12:109110270|109110466 hsa-miR-4488 1 0 0
chr12:109110270|109110466 hsa-miR-4514 1 0 0
chr12:109110270|109110466 hsa-miR-4656 1 1 0
chr12:109110270|109110466 hsa-miR-4673 1 1 0
chr12:109110270|109110466 hsa-miR-4675 0 1 0
chr12:109110270|109110466 hsa-miR-4688 1 0 0
chr12:109110270|109110466 hsa-miR-4689 1 0 0
chr12:109110270|109110466 hsa-miR-4721 1 0 0
chr12:109110270|109110466 hsa-miR-4734 1 0 0
chr12:109110270|109110466 hsa-miR-4741 0 1 0
chr12:109110270|109110466 hsa-miR-5090 1 0 0
chr12:109110270|109110466 hsa-miR-5787 1 1 0
chr12:109110270|109110466 hsa-miR-6081 1 1 0
chr12:109110270|109110466 hsa-miR-8052 1 0 0
chr12:109110270|109110466 hsa-miR-8063 0 1 0
chr12:109110270|109110466 hsa-miR-8087 1 0 0
chr12:109110270|109110466 hsa-miR-8089 1 0 0
chr12:109110270|109110466 hsa-miR-12115 1 1 0
chr12:109110270|109110466 hsa-miR-12119 1 0 0
chr12:109110270|109110466 hsa-miR-4695-5p 1 0 0
chr12:109110270|109110466 hsa-miR-4722-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6890-5p 1 0 0
chr12:109110270|109110466 hsa-miR-3180-3p 1 0 0
chr12:109110270|109110466 hsa-miR-6829-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6732-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6805-5p 1 1 0
chr12:109110270|109110466 hsa-miR-6798-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6735-3p 1 0 0
chr12:109110270|109110466 hsa-miR-6835-5p 1 0 0
chr12:109110270|109110466 hsa-miR-5088-5p 1 0 0
chr12:109110270|109110466 hsa-miR-4763-5p 0 1 0
chr12:109110270|109110466 hsa-miR-6894-3p 0 1 0
chr12:109110270|109110466 hsa-miR-6753-5p 1 0 0
chr12:109110270|109110466 hsa-miR-4690-5p 1 1 0
chr12:109110270|109110466 hsa-miR-4756-3p 0 1 0
chr12:109110270|109110466 hsa-miR-659-5p 0 1 0
chr12:109110270|109110466 hsa-miR-550b-2-5p 0 1 0
chr12:109110270|109110466 hsa-miR-2276-3p 0 1 0
chr12:109110270|109110466 hsa-miR-423-5p 1 0 0
chr12:109110270|109110466 hsa-miR-873-3p 0 1 0
chr12:109110270|109110466 hsa-miR-6793-3p 0 1 0
chr12:109110270|109110466 hsa-miR-6868-5p 0 1 0
chr12:109110270|109110466 hsa-miR-6773-3p 0 1 0
chr12:109110270|109110466 hsa-miR-7844-5p 0 1 0
chr12:109110270|109110466 hsa-miR-1207-5p 1 0 0
chr12:109110270|109110466 hsa-miR-4763-3p 1 1 0
chr12:109110270|109110466 hsa-miR-6787-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6816-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6726-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6743-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6808-5p 1 0 0
chr12:109110270|109110466 hsa-miR-10526-3p 1 0 0
chr12:109110270|109110466 hsa-miR-1237-5p 1 0 0
chr12:109110270|109110466 hsa-miR-328-5p 1 0 0
chr12:109110270|109110466 hsa-miR-449c-5p 0 1 0
chr12:109110270|109110466 hsa-miR-6846-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6848-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6858-5p 1 0 0
chr12:109110270|109110466 hsa-miR-4697-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6885-5p 1 0 0
chr12:109110270|109110466 hsa-miR-939-5p 1 0 0
chr12:109110270|109110466 hsa-miR-365a-5p 0 1 0
chr12:109110270|109110466 hsa-miR-6511a-5p 1 0 0
chr12:109110270|109110466 hsa-miR-6799-3p 0 1 0
chr12:109110270|109110466 hsa-miR-1271-3p 0 1 0
chr12:109110270|109110466 hsa-miR-6791-5p 1 0 0
chr12:109110270|109110466 hsa-miR-550a-3-5p 0 1 0
chr12:109110270|109110466 hsa-miR-550a-5p 1 1 0
chr12:109110270|109110466 hsa-miR-6529-5p 0 1 0
chr12:109110270|109110466 hsa-miR-10400-3p 1 0 0
chr12:109110270|109110466 hsa-miR-6884-5p 0 1 0
chr12:109110270|109110466 hsa-miR-3619-5p 0 1 0
chr12:109110270|109110466 hsa-miR-6838-5p 0 1 0
chr12:109110270|109110466 hsa-miR-4799-3p 0 1 0
chr12:109110270|109110466 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:109110270|109110466
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MLGCFCLERSPCLSLAGQACQSLPVPLPP
Nucleotide Sequence ATGTTGGGGTGTTTTTGCTTAGAAAGGTCCCCTTGTCTCAGCCTTGCAGGGCAGGCATGCCAGTCTCTGCCAGTTCCACTGCCCCCTTGA
CircID chr12:109110270|109110466
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MAPAAPWFCLVRLSVTDVGVFLLRKVPLSQPCRAGMPVSASSTAPLIFEGVLRP
Nucleotide Sequence TTGGCGCCTGCTGCTCCTTGGTTTTGCCTGGTTAGACTTTCAGTGACAGATGTTGGGGTGTTTTTGCTTAGAAAGGTCCCCTTGTCTCAGCCTTGCAGGGCAGGCATGCCAGTCTCTGCCAGTTCCACTGCCCCCTTGATCTTTGAAGGAGTCCTCAGGCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab