CircRNA Information

General Information
circRNA Basic Information
CircID chr12:109563773|109563927
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCAGAATGCCCAGGGTGCCGCACTTTCCACCTCCACATGGACCCAGGTCCCCAGAAACCGCTCCCCGCAGGGTCAGCCCTTCCCACTTCCGTTCTGAAGCCCAGGCTGGAGCCTGCTCAGGCCCCTGGGAACAGACGGAGGGTAGTAGGTGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:109563773|109563927 hsa-miR-17-5p 0 0 1
chr12:109563773|109563927 hsa-miR-17-3p 0 0 1
chr12:109563773|109563927 hsa-miR-20a-5p 0 0 1
chr12:109563773|109563927 hsa-miR-20a-3p 0 0 1
chr12:109563773|109563927 hsa-miR-93-5p 0 0 1
chr12:109563773|109563927 hsa-miR-93-3p 0 0 1
chr12:109563773|109563927 hsa-miR-106a-5p 0 0 1
chr12:109563773|109563927 hsa-miR-106a-3p 0 0 1
chr12:109563773|109563927 hsa-miR-191-5p 0 0 1
chr12:109563773|109563927 hsa-miR-191-3p 0 0 1
chr12:109563773|109563927 hsa-miR-106b-5p 0 0 1
chr12:109563773|109563927 hsa-miR-106b-3p 0 0 1
chr12:109563773|109563927 hsa-miR-20b-5p 0 0 1
chr12:109563773|109563927 hsa-miR-20b-3p 0 0 1
chr12:109563773|109563927 hsa-miR-484 0 0 1
chr12:109563773|109563927 hsa-miR-492 0 0 1
chr12:109563773|109563927 hsa-miR-519d-5p 0 0 1
chr12:109563773|109563927 hsa-miR-519d-3p 0 0 1
chr12:109563773|109563927 hsa-miR-504-5p 0 0 1
chr12:109563773|109563927 hsa-miR-504-3p 0 0 1
chr12:109563773|109563927 hsa-miR-612 0 1 1
chr12:109563773|109563927 hsa-miR-631 0 0 1
chr12:109563773|109563927 hsa-miR-637 1 0 1
chr12:109563773|109563927 hsa-miR-661 1 1 1
chr12:109563773|109563927 hsa-miR-766-5p 0 0 1
chr12:109563773|109563927 hsa-miR-766-3p 0 0 1
chr12:109563773|109563927 hsa-miR-744-5p 0 0 1
chr12:109563773|109563927 hsa-miR-744-3p 0 0 1
chr12:109563773|109563927 hsa-miR-939-5p 0 0 1
chr12:109563773|109563927 hsa-miR-939-3p 0 0 1
chr12:109563773|109563927 hsa-miR-1224-3p 0 1 1
chr12:109563773|109563927 hsa-miR-1285 0 0 1
chr12:109563773|109563927 hsa-miR-663a 1 0 0
chr12:109563773|109563927 hsa-miR-762 1 0 0
chr12:109563773|109563927 hsa-miR-760 1 0 0
chr12:109563773|109563927 hsa-miR-1268a 1 0 0
chr12:109563773|109563927 hsa-miR-1470 0 1 0
chr12:109563773|109563927 hsa-miR-2861 1 1 0
chr12:109563773|109563927 hsa-miR-3155a 0 1 0
chr12:109563773|109563927 hsa-miR-3196 1 0 0
chr12:109563773|109563927 hsa-miR-3649 0 1 0
chr12:109563773|109563927 hsa-miR-1268b 1 0 0
chr12:109563773|109563927 hsa-miR-378g 0 1 0
chr12:109563773|109563927 hsa-miR-4488 1 0 0
chr12:109563773|109563927 hsa-miR-4498 1 0 0
chr12:109563773|109563927 hsa-miR-4505 1 0 0
chr12:109563773|109563927 hsa-miR-3960 1 0 0
chr12:109563773|109563927 hsa-miR-3978 1 1 0
chr12:109563773|109563927 hsa-miR-4651 1 0 0
chr12:109563773|109563927 hsa-miR-4654 1 0 0
chr12:109563773|109563927 hsa-miR-4656 1 0 0
chr12:109563773|109563927 hsa-miR-4657 1 1 0
chr12:109563773|109563927 hsa-miR-4688 1 0 0
chr12:109563773|109563927 hsa-miR-4706 1 0 0
chr12:109563773|109563927 hsa-miR-4734 1 1 0
chr12:109563773|109563927 hsa-miR-4741 1 0 0
chr12:109563773|109563927 hsa-miR-4754 1 0 0
chr12:109563773|109563927 hsa-miR-6085 1 0 0
chr12:109563773|109563927 hsa-miR-6090 1 0 0
chr12:109563773|109563927 hsa-miR-6134 0 1 0
chr12:109563773|109563927 hsa-miR-6860 1 1 0
chr12:109563773|109563927 hsa-miR-8089 1 1 0
chr12:109563773|109563927 hsa-miR-9718 1 0 0
chr12:109563773|109563927 hsa-miR-10226 1 0 0
chr12:109563773|109563927 hsa-miR-12114 1 1 0
chr12:109563773|109563927 hsa-miR-12119 1 0 0
chr12:109563773|109563927 hsa-miR-370-3p 1 0 0
chr12:109563773|109563927 hsa-miR-4433b-3p 1 0 0
chr12:109563773|109563927 hsa-miR-6734-5p 1 0 0
chr12:109563773|109563927 hsa-miR-7155-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6861-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6825-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6857-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6728-5p 1 0 0
chr12:109563773|109563927 hsa-miR-7114-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6880-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6776-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6849-3p 0 1 0
chr12:109563773|109563927 hsa-miR-1292-5p 1 0 0
chr12:109563773|109563927 hsa-miR-3180-3p 1 0 0
chr12:109563773|109563927 hsa-miR-6796-5p 1 1 0
chr12:109563773|109563927 hsa-miR-185-3p 1 0 0
chr12:109563773|109563927 hsa-miR-6829-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6732-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6805-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6827-5p 1 0 0
chr12:109563773|109563927 hsa-miR-23a-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6782-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6810-5p 0 1 0
chr12:109563773|109563927 hsa-miR-1229-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6771-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4690-5p 0 1 0
chr12:109563773|109563927 hsa-miR-6749-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4787-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4667-3p 0 1 0
chr12:109563773|109563927 hsa-miR-4446-3p 1 1 0
chr12:109563773|109563927 hsa-miR-149-3p 1 0 0
chr12:109563773|109563927 hsa-miR-4758-3p 0 1 0
chr12:109563773|109563927 hsa-miR-7848-3p 0 1 0
chr12:109563773|109563927 hsa-miR-10400-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4763-3p 1 0 0
chr12:109563773|109563927 hsa-miR-6816-5p 1 0 0
chr12:109563773|109563927 hsa-miR-1343-5p 1 1 0
chr12:109563773|109563927 hsa-miR-5001-5p 1 1 0
chr12:109563773|109563927 hsa-miR-6726-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6737-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6752-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6756-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6803-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6851-5p 1 1 0
chr12:109563773|109563927 hsa-miR-7107-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6751-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6763-5p 1 1 0
chr12:109563773|109563927 hsa-miR-6779-5p 1 1 0
chr12:109563773|109563927 hsa-miR-6780a-5p 1 0 0
chr12:109563773|109563927 hsa-miR-7111-5p 1 0 0
chr12:109563773|109563927 hsa-miR-3620-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4728-5p 1 0 0
chr12:109563773|109563927 hsa-miR-5196-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6780b-5p 1 0 0
chr12:109563773|109563927 hsa-miR-10396a-5p 1 0 0
chr12:109563773|109563927 hsa-miR-1237-5p 1 0 0
chr12:109563773|109563927 hsa-miR-328-5p 1 0 0
chr12:109563773|109563927 hsa-miR-4745-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6846-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6848-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6889-5p 1 1 0
chr12:109563773|109563927 hsa-miR-4700-5p 0 1 0
chr12:109563773|109563927 hsa-miR-4747-5p 0 1 0
chr12:109563773|109563927 hsa-miR-6791-5p 1 1 0
chr12:109563773|109563927 hsa-miR-6762-5p 1 0 0
chr12:109563773|109563927 hsa-miR-6512-3p 0 1 0
chr12:109563773|109563927 hsa-miR-6783-3p 0 1 0
chr12:109563773|109563927 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:109563773|109563927
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MPRVPHFPPPHGPRSPETAPRRVSPSHFRSEAQAGACSGPWEQTEGSRW
Nucleotide Sequence ATGCCCAGGGTGCCGCACTTTCCACCTCCACATGGACCCAGGTCCCCAGAAACCGCTCCCCGCAGGGTCAGCCCTTCCCACTTCCGTTCTGAAGCCCAGGCTGGAGCCTGCTCAGGCCCCTGGGAACAGACGGAGGGTAGTAGGTGG
CircID chr12:109563773|109563927
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MDPGPQKPLPAGSALPTSVLKPRLEPAQAPGNRRRVVGG
Nucleotide Sequence ATGGACCCAGGTCCCCAGAAACCGCTCCCCGCAGGGTCAGCCCTTCCCACTTCCGTTCTGAAGCCCAGGCTGGAGCCTGCTCAGGCCCCTGGGAACAGACGGAGGGTAGTAGGTGGG
CircID chr12:109563773|109563927
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MTLRGAVSGDLGPCGGGKCGTLGIL
Nucleotide Sequence CTGACCCTGCGGGGAGCGGTTTCTGGGGACCTGGGTCCATGTGGAGGTGGAAAGTGCGGCACCCTGGGCATTCTG
CircID chr12:109563773|109563927
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MGFRTEVGRADPAGSGFWGPGSMWRWKVRHPGHSG
Nucleotide Sequence CTGGGCTTCAGAACGGAAGTGGGAAGGGCTGACCCTGCGGGGAGCGGTTTCTGGGGACCTGGGTCCATGTGGAGGTGGAAAGTGCGGCACCCTGGGCATTCTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab