CircRNA Information

General Information
circRNA Basic Information
CircID chr12:111440115|111440340
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGTGAGATTTATGAAGGAGAAGCCTCACCACCCTGCCCCGGGCCAGCTCCGTGCAAGGAGCAGTGTGTGTGAGCCTCACGTGGCCCTCCTGTGCCTTCACCTACTTCACAGATGAGAAGGCTCAAGAGACCTCCAAGGGGGAGGGAACACAGCACAGGGTGCTTCTATGACCTTCTGGCACAGGACATCTGGAAGGGAGTTTGGAATCTGCATTTTAACATGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:111440115|111440340 hsa-miR-10a-5p 0 0 1
chr12:111440115|111440340 hsa-miR-10a-3p 0 0 1
chr12:111440115|111440340 hsa-miR-10b-5p 0 0 1
chr12:111440115|111440340 hsa-miR-10b-3p 0 0 1
chr12:111440115|111440340 hsa-miR-205-5p 0 0 1
chr12:111440115|111440340 hsa-miR-205-3p 0 0 1
chr12:111440115|111440340 hsa-miR-216a-5p 0 0 1
chr12:111440115|111440340 hsa-miR-216a-3p 0 0 1
chr12:111440115|111440340 hsa-miR-377-5p 0 0 1
chr12:111440115|111440340 hsa-miR-377-3p 0 0 1
chr12:111440115|111440340 hsa-miR-376b-5p 0 0 1
chr12:111440115|111440340 hsa-miR-376b-3p 0 0 1
chr12:111440115|111440340 hsa-miR-493-5p 0 0 1
chr12:111440115|111440340 hsa-miR-493-3p 0 0 1
chr12:111440115|111440340 hsa-miR-432-5p 0 0 1
chr12:111440115|111440340 hsa-miR-432-3p 0 0 1
chr12:111440115|111440340 hsa-miR-526b-5p 0 0 1
chr12:111440115|111440340 hsa-miR-526b-3p 0 0 1
chr12:111440115|111440340 hsa-miR-506-5p 0 0 1
chr12:111440115|111440340 hsa-miR-506-3p 0 0 1
chr12:111440115|111440340 hsa-miR-603 0 1 1
chr12:111440115|111440340 hsa-miR-1227-5p 0 0 1
chr12:111440115|111440340 hsa-miR-1227-3p 0 0 1
chr12:111440115|111440340 hsa-miR-1293 0 0 1
chr12:111440115|111440340 hsa-miR-486-3p 0 0 1
chr12:111440115|111440340 hsa-miR-485-5p 0 0 1
chr12:111440115|111440340 hsa-miR-525-5p 0 0 1
chr12:111440115|111440340 hsa-miR-502-5p 0 0 1
chr12:111440115|111440340 hsa-miR-1207-5p 1 1 1
chr12:111440115|111440340 hsa-miR-520a-5p 0 0 1
chr12:111440115|111440340 hsa-miR-342-3p 0 0 1
chr12:111440115|111440340 hsa-miR-642 0 0 1
chr12:111440115|111440340 hsa-miR-124 0 0 1
chr12:111440115|111440340 hsa-miR-768-5p 0 0 1
chr12:111440115|111440340 hsa-miR-376a 0 0 1
chr12:111440115|111440340 hsa-miR-557 0 1 0
chr12:111440115|111440340 hsa-miR-608 1 0 0
chr12:111440115|111440340 hsa-miR-657 1 1 0
chr12:111440115|111440340 hsa-miR-762 1 0 0
chr12:111440115|111440340 hsa-miR-1268a 1 0 0
chr12:111440115|111440340 hsa-miR-1538 1 0 0
chr12:111440115|111440340 hsa-miR-4281 1 0 0
chr12:111440115|111440340 hsa-miR-4284 0 1 0
chr12:111440115|111440340 hsa-miR-3938 0 1 0
chr12:111440115|111440340 hsa-miR-1268b 1 0 0
chr12:111440115|111440340 hsa-miR-4449 1 0 0
chr12:111440115|111440340 hsa-miR-4487 0 1 0
chr12:111440115|111440340 hsa-miR-5090 1 1 0
chr12:111440115|111440340 hsa-miR-5787 1 0 0
chr12:111440115|111440340 hsa-miR-6126 0 1 0
chr12:111440115|111440340 hsa-miR-6860 1 0 0
chr12:111440115|111440340 hsa-miR-7150 1 0 0
chr12:111440115|111440340 hsa-miR-7706 0 1 0
chr12:111440115|111440340 hsa-miR-3622a-5p 1 1 0
chr12:111440115|111440340 hsa-miR-7114-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6880-5p 1 0 0
chr12:111440115|111440340 hsa-miR-4722-5p 1 1 0
chr12:111440115|111440340 hsa-miR-6727-5p 1 1 0
chr12:111440115|111440340 hsa-miR-1915-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6716-3p 1 0 0
chr12:111440115|111440340 hsa-miR-6815-3p 0 1 0
chr12:111440115|111440340 hsa-miR-6772-3p 0 1 0
chr12:111440115|111440340 hsa-miR-6784-5p 1 1 0
chr12:111440115|111440340 hsa-miR-6749-5p 1 0 0
chr12:111440115|111440340 hsa-miR-642b-5p 0 1 0
chr12:111440115|111440340 hsa-miR-378a-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6800-5p 0 1 0
chr12:111440115|111440340 hsa-miR-146b-3p 0 1 0
chr12:111440115|111440340 hsa-miR-3180-5p 0 1 0
chr12:111440115|111440340 hsa-miR-6871-3p 0 1 0
chr12:111440115|111440340 hsa-miR-3614-3p 0 1 0
chr12:111440115|111440340 hsa-miR-219b-5p 0 1 0
chr12:111440115|111440340 hsa-miR-6732-3p 0 1 0
chr12:111440115|111440340 hsa-miR-4763-3p 1 1 0
chr12:111440115|111440340 hsa-miR-6775-5p 1 1 0
chr12:111440115|111440340 hsa-miR-6743-5p 1 0 0
chr12:111440115|111440340 hsa-miR-7107-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6722-3p 1 0 0
chr12:111440115|111440340 hsa-miR-6808-5p 1 1 0
chr12:111440115|111440340 hsa-miR-4685-3p 1 1 0
chr12:111440115|111440340 hsa-miR-4755-5p 1 0 0
chr12:111440115|111440340 hsa-miR-328-5p 0 1 0
chr12:111440115|111440340 hsa-miR-4632-5p 0 1 0
chr12:111440115|111440340 hsa-miR-4649-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6846-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6724-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6791-5p 1 0 0
chr12:111440115|111440340 hsa-miR-6737-3p 0 1 0
chr12:111440115|111440340 hsa-miR-7853-5p 0 1 0
chr12:111440115|111440340 hsa-miR-452-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:111440115|111440340
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MRRLKRPPRGREHSTGCFYDLLAQDIWKGVWNLHFNMG
Nucleotide Sequence ATGAGAAGGCTCAAGAGACCTCCAAGGGGGAGGGAACACAGCACAGGGTGCTTCTATGACCTTCTGGCACAGGACATCTGGAAGGGAGTTTGGAATCTGCATTTTAACATGGGA
CircID chr12:111440115|111440340
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MKEKPHHPAPGQLRARSSVCEPHVALLCLHLLHR
Nucleotide Sequence ATGAAGGAGAAGCCTCACCACCCTGCCCCGGGCCAGCTCCGTGCAAGGAGCAGTGTGTGTGAGCCTCACGTGGCCCTCCTGTGCCTTCACCTACTTCACAGATGA
CircID chr12:111440115|111440340
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MPRASSVQGAVCVSLTWPSCAFTYFTDEKAQETSKGEGTQHRVLL
Nucleotide Sequence CTGCCCCGGGCCAGCTCCGTGCAAGGAGCAGTGTGTGTGAGCCTCACGTGGCCCTCCTGTGCCTTCACCTACTTCACAGATGAGAAGGCTCAAGAGACCTCCAAGGGGGAGGGAACACAGCACAGGGTGCTTCTATGA
CircID chr12:111440115|111440340
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MQIPNSLPDVLCQKVIEAPCAVFPPPWRSLEPSHL
Nucleotide Sequence ATGCAGATTCCAAACTCCCTTCCAGATGTCCTGTGCCAGAAGGTCATAGAAGCACCCTGTGCTGTGTTCCCTCCCCCTTGGAGGTCTCTTGAGCCTTCTCATCTGTGA
CircID chr12:111440115|111440340
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MCSLPLGGLLSLLICEVGEGTGGPREAHTHCSLHGAGPGQGGEASPS
Nucleotide Sequence CTGTGTTCCCTCCCCCTTGGAGGTCTCTTGAGCCTTCTCATCTGTGAAGTAGGTGAAGGCACAGGAGGGCCACGTGAGGCTCACACACACTGCTCCTTGCACGGAGCTGGCCCGGGGCAGGGTGGTGAGGCTTCTCCTTCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab