CircRNA Information

General Information
circRNA Basic Information
CircID chr12:112022200|112022378
Strand -
CircType exon
Host Gene ENSG00000089248.6;
Algorism CIRI2;
Sequence AAAGAGAGCTACCCAGTCTTCTACCTCTTCCGGGATGGGGACTTTGAGAACCCAGTCCCATACACTGGGGCAGTTAAGGTTGGAGCCATCCAGCGCTGGCTGAAGGGGCAAGGGGTCTACCTAGGTATGCCTGGTTGCCTGCCTGTATACGACGCCCTGGCCGGGGAGTTCATCAGGGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:112022200|112022378 hsa-let-7b-5p 0 0 1
chr12:112022200|112022378 hsa-let-7b-3p 0 0 1
chr12:112022200|112022378 hsa-let-7c-5p 0 0 1
chr12:112022200|112022378 hsa-let-7c-3p 0 0 1
chr12:112022200|112022378 hsa-let-7d-5p 0 0 1
chr12:112022200|112022378 hsa-let-7d-3p 0 0 1
chr12:112022200|112022378 hsa-let-7e-5p 0 0 1
chr12:112022200|112022378 hsa-let-7e-3p 0 0 1
chr12:112022200|112022378 hsa-miR-98-5p 0 0 1
chr12:112022200|112022378 hsa-miR-98-3p 0 0 1
chr12:112022200|112022378 hsa-let-7g-5p 0 0 1
chr12:112022200|112022378 hsa-let-7g-3p 0 0 1
chr12:112022200|112022378 hsa-let-7i-5p 0 0 1
chr12:112022200|112022378 hsa-let-7i-3p 0 0 1
chr12:112022200|112022378 hsa-miR-379-5p 0 0 1
chr12:112022200|112022378 hsa-miR-379-3p 0 0 1
chr12:112022200|112022378 hsa-miR-196b-5p 0 0 1
chr12:112022200|112022378 hsa-miR-196b-3p 0 0 1
chr12:112022200|112022378 hsa-miR-520g-5p 0 0 1
chr12:112022200|112022378 hsa-miR-520g-3p 0 0 1
chr12:112022200|112022378 hsa-miR-520h 0 0 1
chr12:112022200|112022378 hsa-miR-940 0 0 1
chr12:112022200|112022378 hsa-miR-1287-5p 0 0 1
chr12:112022200|112022378 hsa-miR-1287-3p 0 0 1
chr12:112022200|112022378 hsa-miR-513c-5p 0 0 1
chr12:112022200|112022378 hsa-miR-513c-3p 0 0 1
chr12:112022200|112022378 hsa-miR-199a-5p 0 1 1
chr12:112022200|112022378 hsa-miR-199b-5p 0 1 1
chr12:112022200|112022378 hsa-miR-324-3p 0 0 1
chr12:112022200|112022378 hsa-miR-371-5p 0 0 1
chr12:112022200|112022378 hsa-let-7a 0 0 1
chr12:112022200|112022378 hsa-let-7f 0 0 1
chr12:112022200|112022378 hsa-miR-196a 0 0 1
chr12:112022200|112022378 hsa-miR-3916 1 1 0
chr12:112022200|112022378 hsa-miR-4514 0 1 0
chr12:112022200|112022378 hsa-miR-432-3p 0 1 0
chr12:112022200|112022378 hsa-miR-1247-3p 1 1 0
chr12:112022200|112022378 hsa-miR-3157-5p 0 1 0
chr12:112022200|112022378 hsa-miR-6822-3p 0 1 0
chr12:112022200|112022378 hsa-miR-6880-5p 1 0 0
chr12:112022200|112022378 hsa-miR-6806-5p 1 0 0
chr12:112022200|112022378 hsa-miR-1915-5p 0 1 0
chr12:112022200|112022378 hsa-miR-6763-3p 0 1 0
chr12:112022200|112022378 hsa-miR-4783-3p 1 1 0
chr12:112022200|112022378 hsa-miR-4707-5p 1 1 0
chr12:112022200|112022378 hsa-let-7f-5p 1 1 0
chr12:112022200|112022378 hsa-let-7a-5p 0 1 0
chr12:112022200|112022378 hsa-miR-4742-5p 0 1 0
chr12:112022200|112022378 hsa-miR-2114-5p 0 1 0
chr12:112022200|112022378 hsa-miR-1911-3p 0 1 0
chr12:112022200|112022378 hsa-miR-6846-3p 0 1 0
chr12:112022200|112022378 hsa-miR-4763-3p 1 0 0
chr12:112022200|112022378 hsa-miR-6743-5p 1 0 0
chr12:112022200|112022378 hsa-miR-6813-5p 1 0 0
chr12:112022200|112022378 hsa-miR-6808-5p 0 1 0
chr12:112022200|112022378 hsa-miR-3127-3p 0 1 0
chr12:112022200|112022378 hsa-miR-5196-5p 1 0 0
chr12:112022200|112022378 hsa-miR-4685-5p 0 1 0
chr12:112022200|112022378 hsa-miR-7151-3p 0 1 0
chr12:112022200|112022378 hsa-miR-10398-3p 1 0 0
chr12:112022200|112022378 hsa-miR-4646-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:112022200|112022378
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MKGQGVYLGMPGCLPVYDALAGEFIR
Nucleotide Sequence CTGAAGGGGCAAGGGGTCTACCTAGGTATGCCTGGTTGCCTGCCTGTATACGACGCCCTGGCCGGGGAGTTCATCAGG
CircID chr12:112022200|112022378
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MAEGARGLPRYAWLPACIRRPGRGVHQG
Nucleotide Sequence CTGGCTGAAGGGGCAAGGGGTCTACCTAGGTATGCCTGGTTGCCTGCCTGTATACGACGCCCTGGCCGGGGAGTTCATCAGGGC
CircID chr12:112022200|112022378
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPLQPALDGSNLNCPSVWDWVLKVPIPEEVEDWVALF
Nucleotide Sequence TTGCCCCTTCAGCCAGCGCTGGATGGCTCCAACCTTAACTGCCCCAGTGTATGGGACTGGGTTCTCAAAGTCCCCATCCCGGAAGAGGTAGAAGACTGGGTAGCTCTCTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab