CircRNA Information

General Information
circRNA Basic Information
CircID chr12:112970645|112971001
Strand -
CircType exon
Host Gene ENSG00000111331.11;
Algorism CIRI2;
Sequence AGTGTATATGTGGGCTATTGAAGAGCCCTCTGAGCTCGGTTGCTAGCAGGAGAGCATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTGTTGGACACCTAATTGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAGTTTACACATCTTGATGCTGTGGCTCAGTTTGCCTTCCTGAATTTTTATTGGGTCCCTGTTTTCTCTCCTAACATGCTGAGATTCTGCATCCCCACAGCCTAAACTGAGCCAGTGGCCAAACAACCGTGCTCAGCCTGTTTCTCTCTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:112970645|112971001 hsa-miR-30a-5p 0 0 1
chr12:112970645|112971001 hsa-miR-30a-3p 0 0 1
chr12:112970645|112971001 hsa-miR-107 0 0 1
chr12:112970645|112971001 hsa-miR-30d-5p 0 0 1
chr12:112970645|112971001 hsa-miR-30d-3p 0 0 1
chr12:112970645|112971001 hsa-miR-216a-5p 0 0 1
chr12:112970645|112971001 hsa-miR-216a-3p 0 0 1
chr12:112970645|112971001 hsa-miR-30b-5p 0 0 1
chr12:112970645|112971001 hsa-miR-30b-3p 0 0 1
chr12:112970645|112971001 hsa-miR-149-5p 0 0 1
chr12:112970645|112971001 hsa-miR-149-3p 0 0 1
chr12:112970645|112971001 hsa-miR-185-5p 0 0 1
chr12:112970645|112971001 hsa-miR-185-3p 0 0 1
chr12:112970645|112971001 hsa-miR-30e-5p 0 0 1
chr12:112970645|112971001 hsa-miR-30e-3p 0 0 1
chr12:112970645|112971001 hsa-miR-370-5p 0 0 1
chr12:112970645|112971001 hsa-miR-370-3p 0 0 1
chr12:112970645|112971001 hsa-miR-559 0 0 1
chr12:112970645|112971001 hsa-miR-570-5p 0 0 1
chr12:112970645|112971001 hsa-miR-570-3p 0 0 1
chr12:112970645|112971001 hsa-miR-588 0 0 1
chr12:112970645|112971001 hsa-miR-621 0 0 1
chr12:112970645|112971001 hsa-miR-765 1 0 1
chr12:112970645|112971001 hsa-miR-298 0 0 1
chr12:112970645|112971001 hsa-miR-892b 0 0 1
chr12:112970645|112971001 hsa-miR-873-5p 0 0 1
chr12:112970645|112971001 hsa-miR-873-3p 0 0 1
chr12:112970645|112971001 hsa-miR-548j-5p 0 0 1
chr12:112970645|112971001 hsa-miR-548j-3p 0 0 1
chr12:112970645|112971001 hsa-miR-1258 0 0 1
chr12:112970645|112971001 hsa-miR-491-5p 0 0 1
chr12:112970645|112971001 hsa-miR-576-3p 0 0 1
chr12:112970645|112971001 hsa-miR-548b-5p 0 0 1
chr12:112970645|112971001 hsa-miR-548d-5p 0 0 1
chr12:112970645|112971001 hsa-miR-548c-3p 0 0 1
chr12:112970645|112971001 hsa-miR-548c-5p 0 0 1
chr12:112970645|112971001 hsa-miR-548a-5p 0 0 1
chr12:112970645|112971001 hsa-miR-548i 0 0 1
chr12:112970645|112971001 hsa-miR-642 0 0 1
chr12:112970645|112971001 hsa-miR-103 0 0 1
chr12:112970645|112971001 hsa-miR-30c 0 0 1
chr12:112970645|112971001 hsa-miR-24 0 0 1
chr12:112970645|112971001 hsa-miR-548h 0 0 1
chr12:112970645|112971001 hsa-miR-637 1 0 0
chr12:112970645|112971001 hsa-miR-1275 1 0 0
chr12:112970645|112971001 hsa-miR-3141 1 0 0
chr12:112970645|112971001 hsa-miR-3175 1 0 0
chr12:112970645|112971001 hsa-miR-4322 1 0 0
chr12:112970645|112971001 hsa-miR-4261 1 0 0
chr12:112970645|112971001 hsa-miR-4270 1 0 0
chr12:112970645|112971001 hsa-miR-4271 1 0 0
chr12:112970645|112971001 hsa-miR-4486 1 0 0
chr12:112970645|112971001 hsa-miR-4488 1 0 0
chr12:112970645|112971001 hsa-miR-4525 1 0 0
chr12:112970645|112971001 hsa-miR-4656 1 0 0
chr12:112970645|112971001 hsa-miR-4663 1 0 0
chr12:112970645|112971001 hsa-miR-4689 1 0 0
chr12:112970645|112971001 hsa-miR-4706 1 0 0
chr12:112970645|112971001 hsa-miR-4739 1 0 0
chr12:112970645|112971001 hsa-miR-5698 1 0 0
chr12:112970645|112971001 hsa-miR-5739 1 0 0
chr12:112970645|112971001 hsa-miR-6081 1 0 0
chr12:112970645|112971001 hsa-miR-6125 1 0 0
chr12:112970645|112971001 hsa-miR-6127 1 0 0
chr12:112970645|112971001 hsa-miR-6133 1 0 0
chr12:112970645|112971001 hsa-miR-6860 1 0 0
chr12:112970645|112971001 hsa-miR-12115 1 0 0
chr12:112970645|112971001 hsa-miR-135a-3p 1 0 0
chr12:112970645|112971001 hsa-miR-4433b-3p 1 0 0
chr12:112970645|112971001 hsa-miR-122-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6734-5p 1 0 0
chr12:112970645|112971001 hsa-miR-504-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6747-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4433a-3p 1 0 0
chr12:112970645|112971001 hsa-miR-7106-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6825-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6894-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6799-5p 1 0 0
chr12:112970645|112971001 hsa-miR-766-5p 1 0 0
chr12:112970645|112971001 hsa-miR-3934-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6880-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7847-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6746-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4655-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7845-5p 1 0 0
chr12:112970645|112971001 hsa-miR-3180-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6796-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6732-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6805-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6827-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6798-5p 1 0 0
chr12:112970645|112971001 hsa-miR-2467-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6782-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6810-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7109-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4690-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6516-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4713-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6824-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6789-5p 1 0 0
chr12:112970645|112971001 hsa-miR-3944-5p 1 0 0
chr12:112970645|112971001 hsa-miR-3074-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7844-5p 1 0 0
chr12:112970645|112971001 hsa-miR-1233-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6778-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6870-5p 1 0 0
chr12:112970645|112971001 hsa-miR-1343-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6752-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6756-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6803-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6842-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7110-5p 1 0 0
chr12:112970645|112971001 hsa-miR-11181-3p 1 0 0
chr12:112970645|112971001 hsa-miR-1249-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6722-3p 1 0 0
chr12:112970645|112971001 hsa-miR-6751-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6763-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6797-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6875-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6879-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7111-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4728-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6780b-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6836-5p 1 0 0
chr12:112970645|112971001 hsa-miR-1237-5p 1 0 0
chr12:112970645|112971001 hsa-miR-328-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4632-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4649-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4725-3p 1 0 0
chr12:112970645|112971001 hsa-miR-4745-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6729-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6738-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6777-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6795-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6883-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6887-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4723-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6885-5p 1 0 0
chr12:112970645|112971001 hsa-miR-939-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6731-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6856-5p 1 0 0
chr12:112970645|112971001 hsa-miR-1914-3p 1 0 0
chr12:112970645|112971001 hsa-miR-4665-5p 1 0 0
chr12:112970645|112971001 hsa-miR-7151-3p 1 0 0
chr12:112970645|112971001 hsa-miR-4700-5p 1 0 0
chr12:112970645|112971001 hsa-miR-4747-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6766-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6785-5p 1 0 0
chr12:112970645|112971001 hsa-miR-3184-5p 1 0 0
chr12:112970645|112971001 hsa-miR-6859-5p 1 0 0
chr12:112970645|112971001 hsa-miR-130b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:112970645|112971001
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MLAGEHAHIGLLCLPQTQTEGVGTCMLWGPSCWTPNWMPLHERPPFLHLLCCTPPLVYTS
Nucleotide Sequence TTGCTAGCAGGAGAGCATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTGTTGGACACCTAATTGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAGTTTACACATCTTGA
CircID chr12:112970645|112971001
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MPILAYFVCHRHRQRELGHACYGDPLVGHLIGCLFMRGLLFFTFYAALLP
Nucleotide Sequence ATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTGTTGGACACCTAATTGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAG
CircID chr12:112970645|112971001
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MKSPLSSVASRRACPYWLTLSATDTDRGSWDMHAMGTLLLDT
Nucleotide Sequence TTGAAGAGCCCTCTGAGCTCGGTTGCTAGCAGGAGAGCATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTGTTGGACACCTAA
CircID chr12:112970645|112971001
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MHVPTPSVCVCGRQSKPIWACSPASNRAQRALQ
Nucleotide Sequence ATGCATGTCCCAACTCCCTCTGTCTGTGTCTGTGGCAGACAAAGTAAGCCAATATGGGCATGCTCTCCTGCTAGCAACCGAGCTCAGAGGGCTCTTCAATAG
CircID chr12:112970645|112971001
ORF Type ORF5
Protein Length 62
Nucleotide Length 189
Protein Sequence MFGHWLSLGCGDAESQHVRRENRDPIKIQEGKLSHSIKMCKLGEECSIKGEEKEASHEEASN
Nucleotide Sequence TTGTTTGGCCACTGGCTCAGTTTAGGCTGTGGGGATGCAGAATCTCAGCATGTTAGGAGAGAAAACAGGGACCCAATAAAAATTCAGGAAGGCAAACTGAGCCACAGCATCAAGATGTGTAAACTAGGGGAGGAGTGCAGCATAAAAGGTGAAGAAAAGGAGGCCTCTCATGAAGAGGCATCCAATTAG
CircID chr12:112970645|112971001
ORF Type ORF6
Protein Length 37
Nucleotide Length 111
Protein Sequence MSQLPLSVSVADKVSQYGHALLLATELRGLFNSPHIH
Nucleotide Sequence ATGTCCCAACTCCCTCTGTCTGTGTCTGTGGCAGACAAAGTAAGCCAATATGGGCATGCTCTCCTGCTAGCAACCGAGCTCAGAGGGCTCTTCAATAGCCCACATATACAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab