CircRNA Information

General Information
circRNA Basic Information
CircID chr12:113176840|113177093
Strand -
CircType exon
Host Gene ENSG00000123064.11;
Algorism CIRI2;
Sequence CGGTCAGCTTCATCGAACACCACGTATTCCACACTCTGCAGCTTCAGGCTCATTTCCACAGCCACATGCACCAACCGTCCGGGCGTGGCAATAATTCTGGAAGAGGGTGCACAGGCCAGGTGACCCCAGGGCCAGGGCCACCACCACAGTTCTCTTACACCCCCACCACTAGGAAGGGATCTCAGGGAGTCATCCCCAATCCACAAACTCACATGTCGGGATTTTCGTGCAGGGCTGCAAACTGGTCTTCCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:113176840|113177093 hsa-miR-137-5p 0 0 1
chr12:113176840|113177093 hsa-miR-137-3p 0 0 1
chr12:113176840|113177093 hsa-miR-146a-5p 0 0 1
chr12:113176840|113177093 hsa-miR-146a-3p 0 0 1
chr12:113176840|113177093 hsa-miR-328-5p 0 0 1
chr12:113176840|113177093 hsa-miR-328-3p 0 0 1
chr12:113176840|113177093 hsa-miR-384 0 0 1
chr12:113176840|113177093 hsa-miR-605-5p 0 0 1
chr12:113176840|113177093 hsa-miR-605-3p 0 0 1
chr12:113176840|113177093 hsa-miR-1301-5p 0 0 1
chr12:113176840|113177093 hsa-miR-1301-3p 0 0 1
chr12:113176840|113177093 hsa-miR-541-5p 0 0 1
chr12:113176840|113177093 hsa-miR-541-3p 0 0 1
chr12:113176840|113177093 hsa-miR-944 0 1 1
chr12:113176840|113177093 hsa-miR-1236-5p 0 0 1
chr12:113176840|113177093 hsa-miR-1236-3p 0 0 1
chr12:113176840|113177093 hsa-miR-663b 1 1 1
chr12:113176840|113177093 hsa-miR-1291 0 1 1
chr12:113176840|113177093 hsa-miR-127-5p 0 1 1
chr12:113176840|113177093 hsa-miR-140-5p 0 0 1
chr12:113176840|113177093 hsa-miR-615-5p 0 0 1
chr12:113176840|113177093 hsa-miR-574-5p 1 1 1
chr12:113176840|113177093 hsa-miR-654-5p 0 0 1
chr12:113176840|113177093 hsa-miR-525-5p 0 0 1
chr12:113176840|113177093 hsa-miR-188-5p 1 1 1
chr12:113176840|113177093 hsa-miR-876-3p 0 0 1
chr12:113176840|113177093 hsa-miR-520a-5p 0 0 1
chr12:113176840|113177093 hsa-miR-125a-5p 1 1 1
chr12:113176840|113177093 hsa-miR-146b-5p 0 0 1
chr12:113176840|113177093 hsa-miR-323-5p 0 0 1
chr12:113176840|113177093 hsa-miR-125b 0 0 1
chr12:113176840|113177093 hsa-miR-7 0 0 1
chr12:113176840|113177093 hsa-miR-608 1 0 0
chr12:113176840|113177093 hsa-miR-638 1 0 0
chr12:113176840|113177093 hsa-miR-661 0 1 0
chr12:113176840|113177093 hsa-miR-760 1 0 0
chr12:113176840|113177093 hsa-miR-3131 1 0 0
chr12:113176840|113177093 hsa-miR-3176 0 1 0
chr12:113176840|113177093 hsa-miR-4324 0 1 0
chr12:113176840|113177093 hsa-miR-3911 1 0 0
chr12:113176840|113177093 hsa-miR-4440 1 0 0
chr12:113176840|113177093 hsa-miR-3135b 1 0 0
chr12:113176840|113177093 hsa-miR-4466 1 0 0
chr12:113176840|113177093 hsa-miR-4651 1 0 0
chr12:113176840|113177093 hsa-miR-4657 1 1 0
chr12:113176840|113177093 hsa-miR-4660 0 1 0
chr12:113176840|113177093 hsa-miR-5093 1 1 0
chr12:113176840|113177093 hsa-miR-5698 1 0 0
chr12:113176840|113177093 hsa-miR-6081 1 0 0
chr12:113176840|113177093 hsa-miR-6863 1 0 0
chr12:113176840|113177093 hsa-miR-8056 0 1 0
chr12:113176840|113177093 hsa-miR-12121 0 1 0
chr12:113176840|113177093 hsa-miR-370-3p 1 0 0
chr12:113176840|113177093 hsa-miR-122-5p 1 0 0
chr12:113176840|113177093 hsa-miR-7-5p 0 1 0
chr12:113176840|113177093 hsa-miR-7155-5p 0 1 0
chr12:113176840|113177093 hsa-miR-6747-5p 0 1 0
chr12:113176840|113177093 hsa-miR-6833-5p 0 1 0
chr12:113176840|113177093 hsa-miR-7114-5p 0 1 0
chr12:113176840|113177093 hsa-miR-6515-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6880-5p 1 0 0
chr12:113176840|113177093 hsa-miR-4474-3p 1 1 0
chr12:113176840|113177093 hsa-miR-8069 1 0 0
chr12:113176840|113177093 hsa-miR-874-3p 1 1 0
chr12:113176840|113177093 hsa-miR-6772-5p 1 1 0
chr12:113176840|113177093 hsa-miR-6793-5p 1 1 0
chr12:113176840|113177093 hsa-miR-6796-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6732-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6782-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6765-3p 1 1 0
chr12:113176840|113177093 hsa-miR-6821-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6735-3p 1 1 0
chr12:113176840|113177093 hsa-miR-1343-3p 1 0 0
chr12:113176840|113177093 hsa-miR-6786-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6852-5p 0 1 0
chr12:113176840|113177093 hsa-miR-6835-5p 1 0 0
chr12:113176840|113177093 hsa-miR-7109-5p 1 0 0
chr12:113176840|113177093 hsa-miR-296-3p 1 0 0
chr12:113176840|113177093 hsa-miR-4783-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6749-5p 1 0 0
chr12:113176840|113177093 hsa-miR-4787-5p 1 0 0
chr12:113176840|113177093 hsa-miR-3925-5p 1 1 0
chr12:113176840|113177093 hsa-miR-3158-5p 0 1 0
chr12:113176840|113177093 hsa-miR-3678-3p 1 1 0
chr12:113176840|113177093 hsa-miR-7106-3p 1 1 0
chr12:113176840|113177093 hsa-miR-6865-3p 0 1 0
chr12:113176840|113177093 hsa-miR-1914-5p 0 1 0
chr12:113176840|113177093 hsa-miR-6851-3p 1 0 0
chr12:113176840|113177093 hsa-miR-4795-3p 0 1 0
chr12:113176840|113177093 hsa-miR-6769b-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6787-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6737-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6752-5p 1 1 0
chr12:113176840|113177093 hsa-miR-6756-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6769a-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6803-5p 1 1 0
chr12:113176840|113177093 hsa-miR-6842-5p 1 0 0
chr12:113176840|113177093 hsa-miR-7110-5p 1 1 0
chr12:113176840|113177093 hsa-miR-10401-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6751-5p 1 1 0
chr12:113176840|113177093 hsa-miR-4726-5p 1 0 0
chr12:113176840|113177093 hsa-miR-3940-5p 1 1 0
chr12:113176840|113177093 hsa-miR-6799-3p 1 1 0
chr12:113176840|113177093 hsa-miR-6790-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6724-5p 1 0 0
chr12:113176840|113177093 hsa-miR-6791-5p 0 1 0
chr12:113176840|113177093 hsa-miR-7107-3p 0 1 0
chr12:113176840|113177093 hsa-miR-6775-3p 0 1 0
chr12:113176840|113177093 hsa-miR-125b-5p 1 1 0
chr12:113176840|113177093 hsa-miR-5701 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:113176840|113177093
ORF Type ORF1
Protein Length 73
Nucleotide Length 219
Protein Sequence MQLQAHFHSHMHQPSGRGNNSGRGCTGQVTPGPGPPPQFSYTPTTRKGSQGVIPNPQTHMSGFSCRAANWSSI
Nucleotide Sequence CTGCAGCTTCAGGCTCATTTCCACAGCCACATGCACCAACCGTCCGGGCGTGGCAATAATTCTGGAAGAGGGTGCACAGGCCAGGTGACCCCAGGGCCAGGGCCACCACCACAGTTCTCTTACACCCCCACCACTAGGAAGGGATCTCAGGGAGTCATCCCCAATCCACAAACTCACATGTCGGGATTTTCGTGCAGGGCTGCAAACTGGTCTTCCATC
CircID chr12:113176840|113177093
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MWIGDDSLRSLPSGGGVRELWWWPWPWGHLACAPSSRIIATPGRLVHVAVEMSLKLQSVEYVVFDEAD
Nucleotide Sequence TTGTGGATTGGGGATGACTCCCTGAGATCCCTTCCTAGTGGTGGGGGTGTAAGAGAACTGTGGTGGTGGCCCTGGCCCTGGGGTCACCTGGCCTGTGCACCCTCTTCCAGAATTATTGCCACGCCCGGACGGTTGGTGCATGTGGCTGTGGAAATGAGCCTGAAGCTGCAGAGTGTGGAATACGTGGTGTTCGATGAAGCTGAC
CircID chr12:113176840|113177093
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MALGSPGLCTLFQNYCHARTVGACGCGNEPEAAECGIRGVR
Nucleotide Sequence CTGGCCCTGGGGTCACCTGGCCTGTGCACCCTCTTCCAGAATTATTGCCACGCCCGGACGGTTGGTGCATGTGGCTGTGGAAATGAGCCTGAAGCTGCAGAGTGTGGAATACGTGGTGTTCGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab