CircRNA Information

General Information
circRNA Basic Information
CircID chr12:113297520|113297639
Strand +
CircType exon
Host Gene ENSG00000186815.11;
Algorism CIRI2;
Sequence CTGCTACTTGTCCAACTCCCCTGACCTGGGAAGGGGGGAAGGGGAGAACCATGCCGTGCTGGCTATGGGACCCAGCTTGGCCTTGGAGGTGGTTGGGAGGAGGGGGTGGGGGACCAGGTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:113297520|113297639 hsa-miR-150-5p 0 0 1
chr12:113297520|113297639 hsa-miR-150-3p 0 0 1
chr12:113297520|113297639 hsa-miR-562 0 0 1
chr12:113297520|113297639 hsa-miR-571 0 0 1
chr12:113297520|113297639 hsa-miR-575 0 0 1
chr12:113297520|113297639 hsa-miR-619-5p 0 0 1
chr12:113297520|113297639 hsa-miR-619-3p 0 0 1
chr12:113297520|113297639 hsa-miR-361-3p 0 0 1
chr12:113297520|113297639 hsa-miR-133b 1 0 0
chr12:113297520|113297639 hsa-miR-661 1 0 0
chr12:113297520|113297639 hsa-miR-1260a 1 0 0
chr12:113297520|113297639 hsa-miR-1470 1 0 0
chr12:113297520|113297639 hsa-miR-320e 0 1 0
chr12:113297520|113297639 hsa-miR-4259 0 1 0
chr12:113297520|113297639 hsa-miR-4268 1 0 0
chr12:113297520|113297639 hsa-miR-4290 1 0 0
chr12:113297520|113297639 hsa-miR-4450 0 1 0
chr12:113297520|113297639 hsa-miR-4469 1 0 0
chr12:113297520|113297639 hsa-miR-5193 1 1 0
chr12:113297520|113297639 hsa-miR-197-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6749-3p 1 1 0
chr12:113297520|113297639 hsa-miR-218-2-3p 0 1 0
chr12:113297520|113297639 hsa-miR-6892-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6881-3p 1 1 0
chr12:113297520|113297639 hsa-miR-5589-5p 0 1 0
chr12:113297520|113297639 hsa-miR-6845-3p 1 1 0
chr12:113297520|113297639 hsa-miR-877-3p 1 1 0
chr12:113297520|113297639 hsa-miR-4713-5p 1 0 0
chr12:113297520|113297639 hsa-miR-532-3p 1 0 0
chr12:113297520|113297639 hsa-miR-939-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6763-3p 1 0 0
chr12:113297520|113297639 hsa-miR-7108-3p 1 0 0
chr12:113297520|113297639 hsa-miR-4707-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6803-3p 1 0 0
chr12:113297520|113297639 hsa-miR-7113-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6809-3p 0 1 0
chr12:113297520|113297639 hsa-miR-4667-3p 0 1 0
chr12:113297520|113297639 hsa-miR-6824-5p 0 1 0
chr12:113297520|113297639 hsa-miR-4640-3p 1 1 0
chr12:113297520|113297639 hsa-miR-1306-5p 1 1 0
chr12:113297520|113297639 hsa-miR-339-5p 1 0 0
chr12:113297520|113297639 hsa-miR-3922-5p 1 1 0
chr12:113297520|113297639 hsa-miR-4758-3p 1 0 0
chr12:113297520|113297639 hsa-miR-629-3p 0 1 0
chr12:113297520|113297639 hsa-miR-6887-3p 1 1 0
chr12:113297520|113297639 hsa-miR-1224-3p 1 1 0
chr12:113297520|113297639 hsa-miR-6865-3p 1 1 0
chr12:113297520|113297639 hsa-miR-6886-3p 1 0 0
chr12:113297520|113297639 hsa-miR-4749-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6795-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6880-3p 1 0 0
chr12:113297520|113297639 hsa-miR-3177-3p 0 1 0
chr12:113297520|113297639 hsa-miR-4433a-5p 1 0 0
chr12:113297520|113297639 hsa-miR-4433b-5p 1 0 0
chr12:113297520|113297639 hsa-miR-6734-3p 1 1 0
chr12:113297520|113297639 hsa-miR-1249-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6800-3p 1 0 0
chr12:113297520|113297639 hsa-miR-3162-3p 1 1 0
chr12:113297520|113297639 hsa-miR-133a-3p 1 0 0
chr12:113297520|113297639 hsa-miR-3127-3p 1 1 0
chr12:113297520|113297639 hsa-miR-6756-3p 1 1 0
chr12:113297520|113297639 hsa-miR-6784-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6792-3p 1 1 0
chr12:113297520|113297639 hsa-miR-6862-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6810-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6511b-3p 1 0 0
chr12:113297520|113297639 hsa-miR-4691-5p 1 0 0
chr12:113297520|113297639 hsa-miR-6824-3p 1 0 0
chr12:113297520|113297639 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:113297520|113297639
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MSNSPDLGRGEGENHAVLAMGPSLALEVVGRRGWGTR
Nucleotide Sequence TTGTCCAACTCCCCTGACCTGGGAAGGGGGGAAGGGGAGAACCATGCCGTGCTGGCTATGGGACCCAGCTTGGCCTTGGAGGTGGTTGGGAGGAGGGGGTGGGGGACCAGG
CircID chr12:113297520|113297639
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MTWEGGKGRTMPCWLWDPAWPWRWLGGGGGGPG
Nucleotide Sequence CTGACCTGGGAAGGGGGGAAGGGGAGAACCATGCCGTGCTGGCTATGGGACCCAGCTTGGCCTTGGAGGTGGTTGGGAGGAGGGGGTGGGGGACCAGGT
CircID chr12:113297520|113297639
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MVPHPLLPTTSKAKLGPIASTAWFSPSPLPRSGELDK
Nucleotide Sequence CTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab