CircRNA Information

General Information
circRNA Basic Information
CircID chr12:113315335|113315476
Strand -
CircType exon
Host Gene ENSG00000089060.10;
Algorism CIRI2;
Sequence AGGTCCCCGACTGCAGGGTCAGGACCACAACCAGGGGGCTGATAACCAGATGCAGACAGTTGAGGGGCCGTTTCCAGTTCTGGTCATCCTTGTCCGGGTCCACGACGGGGACTGTGAGGAGCAGCAGGAACTCCACAGGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:113315335|113315476 hsa-miR-27a-5p 0 0 1
chr12:113315335|113315476 hsa-miR-27a-3p 0 0 1
chr12:113315335|113315476 hsa-miR-27b-5p 0 0 1
chr12:113315335|113315476 hsa-miR-27b-3p 0 0 1
chr12:113315335|113315476 hsa-miR-370-5p 0 0 1
chr12:113315335|113315476 hsa-miR-370-3p 0 0 1
chr12:113315335|113315476 hsa-miR-346 0 0 1
chr12:113315335|113315476 hsa-miR-504-5p 0 0 1
chr12:113315335|113315476 hsa-miR-504-3p 0 0 1
chr12:113315335|113315476 hsa-miR-632 0 0 1
chr12:113315335|113315476 hsa-miR-542-5p 0 0 1
chr12:113315335|113315476 hsa-miR-361-5p 0 0 1
chr12:113315335|113315476 hsa-miR-331-3p 0 0 1
chr12:113315335|113315476 hsa-miR-875-3p 0 0 1
chr12:113315335|113315476 hsa-miR-128 0 0 1
chr12:113315335|113315476 hsa-miR-453 0 0 1
chr12:113315335|113315476 hsa-miR-4313 0 1 0
chr12:113315335|113315476 hsa-miR-4442 0 1 0
chr12:113315335|113315476 hsa-miR-4739 1 0 0
chr12:113315335|113315476 hsa-miR-12128 1 0 0
chr12:113315335|113315476 hsa-miR-6894-5p 1 0 0
chr12:113315335|113315476 hsa-miR-139-3p 1 0 0
chr12:113315335|113315476 hsa-miR-7114-5p 1 1 0
chr12:113315335|113315476 hsa-miR-6744-5p 0 1 0
chr12:113315335|113315476 hsa-miR-6762-3p 0 1 0
chr12:113315335|113315476 hsa-miR-6787-3p 1 0 0
chr12:113315335|113315476 hsa-miR-4725-5p 0 1 0
chr12:113315335|113315476 hsa-miR-4655-3p 1 0 0
chr12:113315335|113315476 hsa-miR-6735-3p 1 0 0
chr12:113315335|113315476 hsa-miR-6772-3p 0 1 0
chr12:113315335|113315476 hsa-miR-3677-3p 1 1 0
chr12:113315335|113315476 hsa-miR-4640-3p 1 0 0
chr12:113315335|113315476 hsa-miR-4800-5p 0 1 0
chr12:113315335|113315476 hsa-miR-4776-5p 1 0 0
chr12:113315335|113315476 hsa-miR-1237-3p 1 0 0
chr12:113315335|113315476 hsa-miR-3120-5p 0 1 0
chr12:113315335|113315476 hsa-miR-6811-3p 1 1 0
chr12:113315335|113315476 hsa-miR-3074-5p 0 1 0
chr12:113315335|113315476 hsa-miR-4749-3p 1 0 0
chr12:113315335|113315476 hsa-miR-6893-3p 1 1 0
chr12:113315335|113315476 hsa-miR-10401-3p 1 0 0
chr12:113315335|113315476 hsa-miR-10392-3p 1 1 0
chr12:113315335|113315476 hsa-miR-487b-5p 0 1 0
chr12:113315335|113315476 hsa-miR-487a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:113315335|113315476
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MQGQDHNQGADNQMQTVEGPFPVLVILVRVHDGDCEEQQELHRQ
Nucleotide Sequence CTGCAGGGTCAGGACCACAACCAGGGGGCTGATAACCAGATGCAGACAGTTGAGGGGCCGTTTCCAGTTCTGGTCATCCTTGTCCGGGTCCACGACGGGGACTGTGAGGAGCAGCAGGAACTCCACAGGCAG
CircID chr12:113315335|113315476
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MITRCRQLRGRFQFWSSLSGSTTGTVRSSRNSTG
Nucleotide Sequence CTGATAACCAGATGCAGACAGTTGAGGGGCCGTTTCCAGTTCTGGTCATCCTTGTCCGGGTCCACGACGGGGACTGTGAGGAGCAGCAGGAACTCCACAGGC
CircID chr12:113315335|113315476
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence LPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGT
Nucleotide Sequence CTGCCTGTGGAGTTCCTGCTGCTCCTCACAGTCCCCGTCGTGGACCCGGACAAGGATGACCAGAACTGGAAACGGCCCCTCAACTGTCTGCATCTGGTTATCAGCCCCCTGGTTGTGGTCCTGACCCTGCAGTCGGGGACC
CircID chr12:113315335|113315476
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MWSSCCSSQSPSWTRTRMTRTGNGPSTVCIWLSAPWLWS
Nucleotide Sequence CTGTGGAGTTCCTGCTGCTCCTCACAGTCCCCGTCGTGGACCCGGACAAGGATGACCAGAACTGGAAACGGCCCCTCAACTGTCTGCATCTGGTTATCAGCCCCCTGGTTGTGGTCCTGA
CircID chr12:113315335|113315476
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence METAPQLSASGYQPPGCGPDPAVGD
Nucleotide Sequence CTGGAAACGGCCCCTCAACTGTCTGCATCTGGTTATCAGCCCCCTGGTTGTGGTCCTGACCCTGCAGTCGGGGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab