CircRNA Information

General Information
circRNA Basic Information
CircID chr12:113819222|113819372
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGAGCACTTGCGTAGGAAAGGAGAGGTGACACCAAGAGGCCAGAGGGGCCAAAGGGACACAGGGAGGTGGGAGGTCAGTAGGACACGTGCCTCAGAAAAGCCAGAGGCACACATCTGGATGAGGCCTGTGACCCGGTGTTCAGAGTGTGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:113819222|113819372 hsa-miR-204-5p 0 0 1
chr12:113819222|113819372 hsa-miR-204-3p 0 0 1
chr12:113819222|113819372 hsa-miR-211-5p 0 0 1
chr12:113819222|113819372 hsa-miR-211-3p 0 0 1
chr12:113819222|113819372 hsa-miR-149-5p 0 0 1
chr12:113819222|113819372 hsa-miR-149-3p 0 0 1
chr12:113819222|113819372 hsa-miR-302a-5p 0 0 1
chr12:113819222|113819372 hsa-miR-302a-3p 0 0 1
chr12:113819222|113819372 hsa-miR-302b-5p 0 0 1
chr12:113819222|113819372 hsa-miR-302b-3p 0 0 1
chr12:113819222|113819372 hsa-miR-302c-5p 0 0 1
chr12:113819222|113819372 hsa-miR-302c-3p 0 0 1
chr12:113819222|113819372 hsa-miR-302d-5p 0 0 1
chr12:113819222|113819372 hsa-miR-302d-3p 0 0 1
chr12:113819222|113819372 hsa-miR-372-5p 0 0 1
chr12:113819222|113819372 hsa-miR-372-3p 0 0 1
chr12:113819222|113819372 hsa-miR-373-5p 0 0 1
chr12:113819222|113819372 hsa-miR-373-3p 0 0 1
chr12:113819222|113819372 hsa-miR-328-5p 0 0 1
chr12:113819222|113819372 hsa-miR-328-3p 0 0 1
chr12:113819222|113819372 hsa-miR-384 0 0 1
chr12:113819222|113819372 hsa-miR-520e-5p 0 0 1
chr12:113819222|113819372 hsa-miR-520e-3p 0 0 1
chr12:113819222|113819372 hsa-miR-520b-5p 0 0 1
chr12:113819222|113819372 hsa-miR-520b-3p 0 0 1
chr12:113819222|113819372 hsa-miR-597-5p 0 0 1
chr12:113819222|113819372 hsa-miR-597-3p 0 0 1
chr12:113819222|113819372 hsa-miR-302e 0 0 1
chr12:113819222|113819372 hsa-miR-1827 0 0 1
chr12:113819222|113819372 hsa-miR-532-3p 0 0 1
chr12:113819222|113819372 hsa-miR-339-5p 0 0 1
chr12:113819222|113819372 hsa-miR-1224-3p 1 1 1
chr12:113819222|113819372 hsa-miR-576-3p 0 0 1
chr12:113819222|113819372 hsa-miR-513a-5p 0 0 1
chr12:113819222|113819372 hsa-miR-520d-3p 0 0 1
chr12:113819222|113819372 hsa-miR-520a-3p 0 0 1
chr12:113819222|113819372 hsa-miR-520c-3p 0 0 1
chr12:113819222|113819372 hsa-miR-1260 0 0 1
chr12:113819222|113819372 hsa-miR-1274a 0 0 1
chr12:113819222|113819372 hsa-miR-1280 0 0 1
chr12:113819222|113819372 hsa-miR-550 0 0 1
chr12:113819222|113819372 hsa-miR-1274b 0 0 1
chr12:113819222|113819372 hsa-miR-220c 0 0 1
chr12:113819222|113819372 hsa-miR-1260a 0 1 0
chr12:113819222|113819372 hsa-miR-93-3p 1 1 0
chr12:113819222|113819372 hsa-miR-6879-3p 1 0 0
chr12:113819222|113819372 hsa-miR-6836-3p 1 0 0
chr12:113819222|113819372 hsa-miR-4728-3p 1 1 0
chr12:113819222|113819372 hsa-miR-6845-3p 1 1 0
chr12:113819222|113819372 hsa-miR-6774-3p 0 1 0
chr12:113819222|113819372 hsa-miR-4713-5p 1 0 0
chr12:113819222|113819372 hsa-miR-7113-3p 1 1 0
chr12:113819222|113819372 hsa-miR-6821-3p 1 0 0
chr12:113819222|113819372 hsa-miR-6878-3p 0 1 0
chr12:113819222|113819372 hsa-miR-4638-3p 0 1 0
chr12:113819222|113819372 hsa-miR-4694-5p 0 1 0
chr12:113819222|113819372 hsa-miR-2276-5p 0 1 0
chr12:113819222|113819372 hsa-miR-6886-3p 0 1 0
chr12:113819222|113819372 hsa-miR-4749-3p 0 1 0
chr12:113819222|113819372 hsa-miR-4750-3p 1 0 0
chr12:113819222|113819372 hsa-miR-6761-3p 0 1 0
chr12:113819222|113819372 hsa-miR-6800-3p 1 1 0
chr12:113819222|113819372 hsa-miR-4650-5p 0 1 0
chr12:113819222|113819372 hsa-miR-4685-3p 1 0 0
chr12:113819222|113819372 hsa-miR-6893-3p 1 1 0
chr12:113819222|113819372 hsa-miR-4757-5p 0 1 0
chr12:113819222|113819372 hsa-miR-11181-5p 0 1 0
chr12:113819222|113819372 hsa-miR-6744-3p 1 1 0
chr12:113819222|113819372 hsa-miR-6764-3p 0 1 0
chr12:113819222|113819372 hsa-miR-6820-3p 1 0 0
chr12:113819222|113819372 hsa-miR-6855-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:113819222|113819372
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MRRKGEVTPRGQRGQRDTGRWEVSRTRASEKPEAHIWMRPVTRCSEC
Nucleotide Sequence TTGCGTAGGAAAGGAGAGGTGACACCAAGAGGCCAGAGGGGCCAAAGGGACACAGGGAGGTGGGAGGTCAGTAGGACACGTGCCTCAGAAAAGCCAGAGGCACACATCTGGATGAGGCCTGTGACCCGGTGTTCAGAGTGT
CircID chr12:113819222|113819372
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MCASGFSEARVLLTSHLPVSLWPLWPLGVTSPFLRKCS
Nucleotide Sequence ATGTGTGCCTCTGGCTTTTCTGAGGCACGTGTCCTACTGACCTCCCACCTCCCTGTGTCCCTTTGGCCCCTCTGGCCTCTTGGTGTCACCTCTCCTTTCCTACGCAAGTGCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab