CircRNA Information

General Information
circRNA Basic Information
CircID chr12:116237468|116237705
Strand -
CircType exon
Host Gene ENSG00000123066.7;
Algorism find_circ;CIRI2;DCC;
Sequence GCTGAACTCACGGGAATCAAATGGCGTAGGTACAATTTTGGAGGGCATGGGGACTGTGGACCCATAATTTCAGCCCCAGCCCAAGATGATCCAATTCTGTTAAGTTTCATCCGCTGTCTGCAAGCTAACCTGCTTTGTGTATGGCGTCGTGATGTCAAACCAGATTGCAAAGAGTTATGGATATTCTGGTGGGGAGATGAACCCAACCTAGTGGGTGTAATACATCATGAACTGCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:116237468|116237705 hsa-miR-143-5p 0 0 1
chr12:116237468|116237705 hsa-miR-143-3p 0 0 1
chr12:116237468|116237705 hsa-miR-346 1 0 1
chr12:116237468|116237705 hsa-miR-527 0 0 1
chr12:116237468|116237705 hsa-miR-599 0 0 1
chr12:116237468|116237705 hsa-miR-609 0 0 1
chr12:116237468|116237705 hsa-miR-626 0 0 1
chr12:116237468|116237705 hsa-miR-632 0 0 1
chr12:116237468|116237705 hsa-miR-640 0 0 1
chr12:116237468|116237705 hsa-miR-649 0 0 1
chr12:116237468|116237705 hsa-miR-652-5p 0 0 1
chr12:116237468|116237705 hsa-miR-652-3p 0 0 1
chr12:116237468|116237705 hsa-miR-655-5p 0 0 1
chr12:116237468|116237705 hsa-miR-655-3p 0 0 1
chr12:116237468|116237705 hsa-miR-541-5p 0 0 1
chr12:116237468|116237705 hsa-miR-541-3p 0 0 1
chr12:116237468|116237705 hsa-miR-939-5p 0 0 1
chr12:116237468|116237705 hsa-miR-939-3p 0 0 1
chr12:116237468|116237705 hsa-miR-1205 0 0 1
chr12:116237468|116237705 hsa-miR-1246 0 0 1
chr12:116237468|116237705 hsa-miR-491-5p 0 0 1
chr12:116237468|116237705 hsa-miR-490-3p 0 0 1
chr12:116237468|116237705 hsa-miR-654-5p 0 0 1
chr12:116237468|116237705 hsa-miR-509-3-5p 0 0 1
chr12:116237468|116237705 hsa-miR-509-5p 0 0 1
chr12:116237468|116237705 hsa-miR-518a-5p 0 0 1
chr12:116237468|116237705 hsa-miR-105 0 0 1
chr12:116237468|116237705 hsa-miR-768-5p 0 0 1
chr12:116237468|116237705 hsa-miR-499-3p 0 0 1
chr12:116237468|116237705 hsa-miR-422a 1 0 0
chr12:116237468|116237705 hsa-miR-3175 0 1 0
chr12:116237468|116237705 hsa-miR-378c 1 0 0
chr12:116237468|116237705 hsa-miR-1268b 1 0 0
chr12:116237468|116237705 hsa-miR-378e 1 0 0
chr12:116237468|116237705 hsa-miR-378h 1 0 0
chr12:116237468|116237705 hsa-miR-4488 1 0 0
chr12:116237468|116237705 hsa-miR-378i 1 0 0
chr12:116237468|116237705 hsa-miR-4681 0 1 0
chr12:116237468|116237705 hsa-miR-5685 0 1 0
chr12:116237468|116237705 hsa-miR-7974 1 0 0
chr12:116237468|116237705 hsa-miR-8052 0 1 0
chr12:116237468|116237705 hsa-miR-9718 1 0 0
chr12:116237468|116237705 hsa-miR-12113 1 1 0
chr12:116237468|116237705 hsa-miR-3150a-3p 0 1 0
chr12:116237468|116237705 hsa-miR-6857-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6515-5p 0 1 0
chr12:116237468|116237705 hsa-miR-4761-3p 0 1 0
chr12:116237468|116237705 hsa-miR-6742-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6716-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6772-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6793-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6798-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6810-5p 1 1 0
chr12:116237468|116237705 hsa-miR-32-3p 0 1 0
chr12:116237468|116237705 hsa-miR-149-3p 0 1 0
chr12:116237468|116237705 hsa-miR-202-3p 1 0 0
chr12:116237468|116237705 hsa-miR-1225-5p 1 0 0
chr12:116237468|116237705 hsa-miR-5591-3p 0 1 0
chr12:116237468|116237705 hsa-miR-3124-5p 1 0 0
chr12:116237468|116237705 hsa-miR-4714-3p 0 1 0
chr12:116237468|116237705 hsa-miR-4652-3p 0 1 0
chr12:116237468|116237705 hsa-miR-6775-5p 1 0 0
chr12:116237468|116237705 hsa-miR-1343-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6769a-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6797-5p 1 0 0
chr12:116237468|116237705 hsa-miR-328-5p 1 0 0
chr12:116237468|116237705 hsa-miR-4649-5p 1 0 0
chr12:116237468|116237705 hsa-miR-675-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6848-5p 1 0 0
chr12:116237468|116237705 hsa-miR-378a-3p 1 0 0
chr12:116237468|116237705 hsa-miR-6785-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6849-5p 1 0 0
chr12:116237468|116237705 hsa-miR-137-5p 1 0 0
chr12:116237468|116237705 hsa-miR-6876-3p 0 1 0
chr12:116237468|116237705 hsa-miR-378d 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:116237468|116237705
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MKLNRIGSSWAGAEIMGPQSPCPPKLYLRHLIPVSS
Nucleotide Sequence ATGAAACTTAACAGAATTGGATCATCTTGGGCTGGGGCTGAAATTATGGGTCCACAGTCCCCATGCCCTCCAAAATTGTACCTACGCCATTTGATTCCCGTGAGTTCA
CircID chr12:116237468|116237705
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MDHLGLGLKLWVHSPHALQNCTYAI
Nucleotide Sequence TTGGATCATCTTGGGCTGGGGCTGAAATTATGGGTCCACAGTCCCCATGCCCTCCAAAATTGTACCTACGCCATTTGA
CircID chr12:116237468|116237705
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MGSSPHQNIHNSLQSGLTSRRHTQSRLACRQRMKLNRIGSSWAGAEIMGPQSPCPPKLYLRHLIPVSS
Nucleotide Sequence TTGGGTTCATCTCCCCACCAGAATATCCATAACTCTTTGCAATCTGGTTTGACATCACGACGCCATACACAAAGCAGGTTAGCTTGCAGACAGCGGATGAAACTTAACAGAATTGGATCATCTTGGGCTGGGGCTGAAATTATGGGTCCACAGTCCCCATGCCCTCCAAAATTGTACCTACGCCATTTGATTCCCGTGAGTTCA
CircID chr12:116237468|116237705
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MLSFIRCLQANLLCVWRRDVKPDCKELWIFWWGDEPNLVGVIHHELQ
Nucleotide Sequence CTGTTAAGTTTCATCCGCTGTCTGCAAGCTAACCTGCTTTGTGTATGGCGTCGTGATGTCAAACCAGATTGCAAAGAGTTATGGATATTCTGGTGGGGAGATGAACCCAACCTAGTGGGTGTAATACATCATGAACTGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:116237468|116237705 RBM5 1 0 0
chr12:116237468|116237705 NOP56 0 1 1
chr12:116237468|116237705 MOV10 0 1 1
chr12:116237468|116237705 ELAVL1 1 12 2
chr12:116237468|116237705 ELAVL3 0 1 0
chr12:116237468|116237705 CELF2 0 2 0
chr12:116237468|116237705 PRPF8 0 1 0
chr12:116237468|116237705 SLBP 0 1 0
chr12:116237468|116237705 UPF1 1 1 0
chr12:116237468|116237705 TAF15 0 1 0
chr12:116237468|116237705 FMR1 0 1 7
chr12:116237468|116237705 FUS 1 1 0
chr12:116237468|116237705 SRSF1 0 4 5
chr12:116237468|116237705 NOP58 1 2 1
chr12:116237468|116237705 SRSF3 0 2 0
chr12:116237468|116237705 U2AF1 2 7 2
chr12:116237468|116237705 U2AF2 4 32 3
chr12:116237468|116237705 SRSF9 0 0 2
chr12:116237468|116237705 DDX54 0 1 5
chr12:116237468|116237705 RBM10 0 1 0
chr12:116237468|116237705 PCBP2 0 1 0
chr12:116237468|116237705 SF3A3 0 1 0
chr12:116237468|116237705 PTBP1 1 1 0
chr12:116237468|116237705 HNRNPC 0 3 0
chr12:116237468|116237705 HNRNPD 0 1 0
chr12:116237468|116237705 DHX9 1 0 0
chr12:116237468|116237705 HNRNPA1 0 11 0
chr12:116237468|116237705 SMNDC1 0 1 0
chr12:116237468|116237705 MSI2 1 1 1
chr12:116237468|116237705 MSI1 2 0 0
chr12:116237468|116237705 ACIN1 0 1 0
chr12:116237468|116237705 LIN28B 0 0 3
chr12:116237468|116237705 FXR2 0 1 3
chr12:116237468|116237705 IGF2BP1 0 0 1
chr12:116237468|116237705 IGF2BP3 0 0 1
chr12:116237468|116237705 IGF2BP2 0 1 5
chr12:116237468|116237705 TARDBP 0 1 0
chr12:116237468|116237705 RBM47 0 1 1
chr12:116237468|116237705 CSTF2T 0 0 1
chr12:116237468|116237705 BCCIP 0 1 0
chr12:116237468|116237705 TIA1 0 1 0
chr12:116237468|116237705 RBM22 0 2 0
chr12:116237468|116237705 TIAL1 0 1 0
chr12:116237468|116237705 AGO2 0 2 0
chr12:116237468|116237705 EIF4A3 4 5 3
chr12:116237468|116237705 FBL 0 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab