CircRNA Information

General Information
circRNA Basic Information
CircID chr12:117039013|117039186
Strand -
CircType exon
Host Gene ENSG00000088992.16;
Algorism CIRI2;
Sequence GAGCCTTGGCTATGTACCGGCGCTGCAGGAAGAGGCTGTCCGCCGGGCCTGGGCTGCTCCAGCTACGCGGGGAGGCGGCCCCATTGCAAAGTGCAGTTTCTCCGCGGAGGTGGCGGTGGGTCAGTGGCAGAGGGCCATGGTTTCCATGTTAAGGAAGCGGACGTGCATCTTGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:117039013|117039186 hsa-miR-376c-5p 0 0 1
chr12:117039013|117039186 hsa-miR-376c-3p 0 0 1
chr12:117039013|117039186 hsa-miR-328-5p 0 0 1
chr12:117039013|117039186 hsa-miR-328-3p 0 0 1
chr12:117039013|117039186 hsa-miR-1236-5p 0 0 1
chr12:117039013|117039186 hsa-miR-1236-3p 0 0 1
chr12:117039013|117039186 hsa-miR-1291 0 0 1
chr12:117039013|117039186 hsa-miR-1281 0 0 1
chr12:117039013|117039186 hsa-miR-1184 0 1 1
chr12:117039013|117039186 hsa-miR-516a-3p 0 0 1
chr12:117039013|117039186 hsa-miR-450b-5p 0 0 1
chr12:117039013|117039186 hsa-miR-1280 0 0 1
chr12:117039013|117039186 hsa-miR-1470 1 0 0
chr12:117039013|117039186 hsa-miR-1471 0 1 0
chr12:117039013|117039186 hsa-miR-1538 0 1 0
chr12:117039013|117039186 hsa-miR-1913 1 0 0
chr12:117039013|117039186 hsa-miR-4252 0 1 0
chr12:117039013|117039186 hsa-miR-3135b 0 1 0
chr12:117039013|117039186 hsa-miR-4688 1 0 0
chr12:117039013|117039186 hsa-miR-4706 1 0 0
chr12:117039013|117039186 hsa-miR-6081 1 1 0
chr12:117039013|117039186 hsa-miR-7706 1 0 0
chr12:117039013|117039186 hsa-miR-128-1-5p 0 1 0
chr12:117039013|117039186 hsa-miR-4665-3p 1 0 0
chr12:117039013|117039186 hsa-miR-181a-2-3p 0 1 0
chr12:117039013|117039186 hsa-miR-4697-3p 1 0 0
chr12:117039013|117039186 hsa-miR-486-3p 0 1 0
chr12:117039013|117039186 hsa-miR-4793-3p 0 1 0
chr12:117039013|117039186 hsa-miR-6882-3p 0 1 0
chr12:117039013|117039186 hsa-miR-6884-3p 1 0 0
chr12:117039013|117039186 hsa-miR-1908-3p 1 0 0
chr12:117039013|117039186 hsa-miR-1306-5p 0 1 0
chr12:117039013|117039186 hsa-miR-6825-3p 1 1 0
chr12:117039013|117039186 hsa-miR-2276-5p 0 1 0
chr12:117039013|117039186 hsa-miR-302c-5p 0 1 0
chr12:117039013|117039186 hsa-miR-6851-3p 1 0 0
chr12:117039013|117039186 hsa-miR-4750-3p 1 1 0
chr12:117039013|117039186 hsa-miR-4727-5p 0 1 0
chr12:117039013|117039186 hsa-miR-3688-3p 0 1 0
chr12:117039013|117039186 hsa-miR-5001-5p 1 0 0
chr12:117039013|117039186 hsa-miR-4632-5p 1 0 0
chr12:117039013|117039186 hsa-miR-4745-3p 1 1 0
chr12:117039013|117039186 hsa-miR-6877-3p 0 1 0
chr12:117039013|117039186 hsa-miR-2682-3p 0 1 0
chr12:117039013|117039186 hsa-miR-6762-5p 1 0 0
chr12:117039013|117039186 hsa-miR-6805-3p 1 0 0
chr12:117039013|117039186 hsa-miR-6819-3p 0 1 0
chr12:117039013|117039186 hsa-miR-7114-3p 1 1 0
chr12:117039013|117039186 hsa-miR-6781-3p 0 1 0
chr12:117039013|117039186 hsa-miR-4690-3p 0 1 0
chr12:117039013|117039186 hsa-miR-302d-5p 0 1 0
chr12:117039013|117039186 hsa-miR-367-3p 0 1 0
chr12:117039013|117039186 hsa-miR-302b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:117039013|117039186
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MGCSSYAGRRPHCKVQFLRGGGGGSVAEGHGFHVKEADVHLG
Nucleotide Sequence CTGGGCTGCTCCAGCTACGCGGGGAGGCGGCCCCATTGCAAAGTGCAGTTTCTCCGCGGAGGTGGCGGTGGGTCAGTGGCAGAGGGCCATGGTTTCCATGTTAAGGAAGCGGACGTGCATCTTGGT
CircID chr12:117039013|117039186
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MQEEAVRRAWAAPATRGGGPIAKCSFSAEVAVGQWQRAMVSMLRKRTCIL
Nucleotide Sequence CTGCAGGAAGAGGCTGTCCGCCGGGCCTGGGCTGCTCCAGCTACGCGGGGAGGCGGCCCCATTGCAAAGTGCAGTTTCTCCGCGGAGGTGGCGGTGGGTCAGTGGCAGAGGGCCATGGTTTCCATGTTAAGGAAGCGGACGTGCATCTTG
CircID chr12:117039013|117039186
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MAMYRRCRKRLSAGPGLLQLRGEAAPLQSAVSPRRWRWVSGRGPWFPC
Nucleotide Sequence TTGGCTATGTACCGGCGCTGCAGGAAGAGGCTGTCCGCCGGGCCTGGGCTGCTCCAGCTACGCGGGGAGGCGGCCCCATTGCAAAGTGCAGTTTCTCCGCGGAGGTGGCGGTGGGTCAGTGGCAGAGGGCCATGGTTTCCATGTTAA
CircID chr12:117039013|117039186
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MHFAMGPPPRVAGAAQARRTASSCSAGT
Nucleotide Sequence CTGCACTTTGCAATGGGGCCGCCTCCCCGCGTAGCTGGAGCAGCCCAGGCCCGGCGGACAGCCTCTTCCTGCAGCGCCGGTACATAG
CircID chr12:117039013|117039186
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MPLTHRHLRGETALCNGAASPRSWSSPGPADSLFLQRRYIAKA
Nucleotide Sequence CTGCCACTGACCCACCGCCACCTCCGCGGAGAAACTGCACTTTGCAATGGGGCCGCCTCCCCGCGTAGCTGGAGCAGCCCAGGCCCGGCGGACAGCCTCTTCCTGCAGCGCCGGTACATAGCCAAGGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab