CircRNA Information

General Information
circRNA Basic Information
CircID chr12:118033598|118033763
Strand -
CircType exon
Host Gene ENSG00000176871.7;
Algorism CIRI2;
Sequence GGCCTCTGAGTCCCCTGTAATTTAGTTAAGCTAAATTAATACCTCATACCAAATGGCTCCAGGAAAACTGTCCTGCAGGTCAGAAGGGAGCCCAAGAAGAAAAGCACTTGGCCAACATCGAAGCAACTCTGACCACAGCAGGAGAGAACTTGAACCAATGCTACCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:118033598|118033763 hsa-let-7b-5p 0 0 1
chr12:118033598|118033763 hsa-let-7b-3p 0 0 1
chr12:118033598|118033763 hsa-let-7c-5p 0 0 1
chr12:118033598|118033763 hsa-let-7c-3p 0 0 1
chr12:118033598|118033763 hsa-let-7d-5p 0 0 1
chr12:118033598|118033763 hsa-let-7d-3p 0 0 1
chr12:118033598|118033763 hsa-let-7e-5p 0 0 1
chr12:118033598|118033763 hsa-let-7e-3p 0 0 1
chr12:118033598|118033763 hsa-miR-21-5p 0 0 1
chr12:118033598|118033763 hsa-miR-21-3p 0 0 1
chr12:118033598|118033763 hsa-miR-26b-5p 0 0 1
chr12:118033598|118033763 hsa-miR-26b-3p 0 0 1
chr12:118033598|118033763 hsa-miR-98-5p 0 0 1
chr12:118033598|118033763 hsa-miR-98-3p 0 0 1
chr12:118033598|118033763 hsa-let-7g-5p 0 0 1
chr12:118033598|118033763 hsa-let-7g-3p 0 0 1
chr12:118033598|118033763 hsa-let-7i-5p 0 0 1
chr12:118033598|118033763 hsa-let-7i-3p 0 0 1
chr12:118033598|118033763 hsa-miR-302a-5p 0 0 1
chr12:118033598|118033763 hsa-miR-302a-3p 0 0 1
chr12:118033598|118033763 hsa-miR-302b-5p 0 0 1
chr12:118033598|118033763 hsa-miR-302b-3p 0 0 1
chr12:118033598|118033763 hsa-miR-302c-5p 0 0 1
chr12:118033598|118033763 hsa-miR-302c-3p 0 0 1
chr12:118033598|118033763 hsa-miR-302d-5p 0 0 1
chr12:118033598|118033763 hsa-miR-302d-3p 0 0 1
chr12:118033598|118033763 hsa-miR-370-5p 0 0 1
chr12:118033598|118033763 hsa-miR-370-3p 0 0 1
chr12:118033598|118033763 hsa-miR-372-5p 0 0 1
chr12:118033598|118033763 hsa-miR-372-3p 0 0 1
chr12:118033598|118033763 hsa-miR-373-5p 0 0 1
chr12:118033598|118033763 hsa-miR-373-3p 0 0 1
chr12:118033598|118033763 hsa-miR-202-5p 0 0 1
chr12:118033598|118033763 hsa-miR-202-3p 0 0 1
chr12:118033598|118033763 hsa-miR-520e-5p 0 0 1
chr12:118033598|118033763 hsa-miR-520e-3p 0 0 1
chr12:118033598|118033763 hsa-miR-520f-5p 0 0 1
chr12:118033598|118033763 hsa-miR-520f-3p 0 0 1
chr12:118033598|118033763 hsa-miR-520b-5p 0 0 1
chr12:118033598|118033763 hsa-miR-520b-3p 0 0 1
chr12:118033598|118033763 hsa-miR-588 -8 0 1
chr12:118033598|118033763 hsa-miR-631 0 0 1
chr12:118033598|118033763 hsa-miR-635 1 0 1
chr12:118033598|118033763 hsa-miR-659-5p 0 0 1
chr12:118033598|118033763 hsa-miR-659-3p 0 0 1
chr12:118033598|118033763 hsa-miR-1179 -5 0 1
chr12:118033598|118033763 hsa-miR-1237-5p 0 0 1
chr12:118033598|118033763 hsa-miR-1237-3p 0 0 1
chr12:118033598|118033763 hsa-miR-1205 -1 1 1
chr12:118033598|118033763 hsa-miR-1286 -7 0 1
chr12:118033598|118033763 hsa-miR-1297 5 0 1
chr12:118033598|118033763 hsa-miR-302e -4 0 1
chr12:118033598|118033763 hsa-miR-520d-3p -16 1 1
chr12:118033598|118033763 hsa-miR-520a-3p -13 0 1
chr12:118033598|118033763 hsa-miR-520c-3p -9 1 1
chr12:118033598|118033763 hsa-miR-590-5p -1 0 1
chr12:118033598|118033763 hsa-miR-26a 0 0 1
chr12:118033598|118033763 hsa-let-7a 0 0 1
chr12:118033598|118033763 hsa-let-7f 0 0 1
chr12:118033598|118033763 hsa-miR-492 -14 1 0
chr12:118033598|118033763 hsa-miR-2117 -6 1 0
chr12:118033598|118033763 hsa-miR-4256 -6 1 0
chr12:118033598|118033763 hsa-miR-4254 -13 1 0
chr12:118033598|118033763 hsa-miR-505-5p -14 1 0
chr12:118033598|118033763 hsa-miR-6845-3p -6 1 0
chr12:118033598|118033763 hsa-miR-499b-5p -6 1 0
chr12:118033598|118033763 hsa-miR-4685-3p -5 1 0
chr12:118033598|118033763 hsa-miR-10398-5p -7 1 0
chr12:118033598|118033763 hsa-miR-10400-3p -14 1 0
chr12:118033598|118033763 hsa-miR-10399-5p 0 1 0
chr12:118033598|118033763 hsa-miR-10393-3p -5 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:118033598|118033763
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MAPGKLSCRSEGSPRRKALGQHRSNSDHSRRELEPMLP
Nucleotide Sequence ATGGCTCCAGGAAAACTGTCCTGCAGGTCAGAAGGGAGCCCAAGAAGAAAAGCACTTGGCCAACATCGAAGCAACTCTGACCACAGCAGGAGAGAACTTGAACCAATGCTACCA
CircID chr12:118033598|118033763
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MLWSELLRCWPSAFLLGLPSDLQDSFPGAIWYEVLI
Nucleotide Sequence CTGCTGTGGTCAGAGTTGCTTCGATGTTGGCCAAGTGCTTTTCTTCTTGGGCTCCCTTCTGACCTGCAGGACAGTTTTCCTGGAGCCATTTGGTATGAGGTATTAATTTAG
CircID chr12:118033598|118033763
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MVQVLSCCGQSCFDVGQVLFFLGSLLTCRTVFLEPFGMRY
Nucleotide Sequence TTGGTTCAAGTTCTCTCCTGCTGTGGTCAGAGTTGCTTCGATGTTGGCCAAGTGCTTTTCTTCTTGGGCTCCCTTCTGACCTGCAGGACAGTTTTCCTGGAGCCATTTGGTATGAGGTATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab