CircRNA Information

General Information
circRNA Basic Information
CircID chr12:119681243|119681581
Strand -
CircType exon
Host Gene ENSG00000111725.9;
Algorism CIRI2;
Sequence CTTGCTCAGGACCTCTGCCCCTAGTTAGCAAGACTGCAGCAGTTGCTGTTGCTTATTCTGAAAGGAATGTAGAACTTGACAGCAGCCTTCTGAGTCTGGGTCAGGAAGATGTCCTTTGGACCAAAGCAGACTTCTTTATACGCAGCTCAGTTTCCCGGGAGTCGCCACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTATGCCCTTTGCTCCTGGTGGGAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTACCCTTTTTTGTGACTTTTCAAAACAGTGAATTACTGTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:119681243|119681581 hsa-miR-181c-5p 0 0 1
chr12:119681243|119681581 hsa-miR-181c-3p 0 0 1
chr12:119681243|119681581 hsa-miR-224-5p 0 0 1
chr12:119681243|119681581 hsa-miR-224-3p 0 0 1
chr12:119681243|119681581 hsa-miR-200b-5p 0 0 1
chr12:119681243|119681581 hsa-miR-200b-3p 0 0 1
chr12:119681243|119681581 hsa-miR-150-5p 0 0 1
chr12:119681243|119681581 hsa-miR-150-3p 0 0 1
chr12:119681243|119681581 hsa-miR-186-5p 0 0 1
chr12:119681243|119681581 hsa-miR-186-3p 0 0 1
chr12:119681243|119681581 hsa-miR-200c-5p 0 0 1
chr12:119681243|119681581 hsa-miR-200c-3p 0 0 1
chr12:119681243|119681581 hsa-miR-340-5p 0 0 1
chr12:119681243|119681581 hsa-miR-340-3p 0 0 1
chr12:119681243|119681581 hsa-miR-133b 0 0 1
chr12:119681243|119681581 hsa-miR-345-5p 0 0 1
chr12:119681243|119681581 hsa-miR-345-3p 0 0 1
chr12:119681243|119681581 hsa-miR-429 0 0 1
chr12:119681243|119681581 hsa-miR-431-5p 0 0 1
chr12:119681243|119681581 hsa-miR-431-3p 0 0 1
chr12:119681243|119681581 hsa-miR-452-5p 0 0 1
chr12:119681243|119681581 hsa-miR-452-3p 0 0 1
chr12:119681243|119681581 hsa-miR-181d-5p 0 0 1
chr12:119681243|119681581 hsa-miR-181d-3p 0 0 1
chr12:119681243|119681581 hsa-miR-510-5p 0 0 1
chr12:119681243|119681581 hsa-miR-510-3p 0 0 1
chr12:119681243|119681581 hsa-miR-558 0 0 1
chr12:119681243|119681581 hsa-miR-572 0 0 1
chr12:119681243|119681581 hsa-miR-626 0 0 1
chr12:119681243|119681581 hsa-miR-665 0 1 1
chr12:119681243|119681581 hsa-miR-920 0 0 1
chr12:119681243|119681581 hsa-miR-1200 0 0 1
chr12:119681243|119681581 hsa-miR-1208 0 0 1
chr12:119681243|119681581 hsa-miR-1243 0 0 1
chr12:119681243|119681581 hsa-miR-486-3p 0 0 1
chr12:119681243|119681581 hsa-miR-532-3p 0 0 1
chr12:119681243|119681581 hsa-miR-142-5p 0 0 1
chr12:119681243|119681581 hsa-miR-490-3p 0 0 1
chr12:119681243|119681581 hsa-miR-1225-5p 0 0 1
chr12:119681243|119681581 hsa-miR-1224-3p 0 0 1
chr12:119681243|119681581 hsa-miR-483-3p 0 1 1
chr12:119681243|119681581 hsa-miR-542-3p 0 0 1
chr12:119681243|119681581 hsa-miR-1260 0 0 1
chr12:119681243|119681581 hsa-miR-1280 0 0 1
chr12:119681243|119681581 hsa-miR-642 0 0 1
chr12:119681243|119681581 hsa-miR-9 0 0 1
chr12:119681243|119681581 hsa-miR-181a 0 0 1
chr12:119681243|119681581 hsa-miR-181b 0 0 1
chr12:119681243|119681581 hsa-miR-1273 0 0 1
chr12:119681243|119681581 hsa-miR-133a 0 0 1
chr12:119681243|119681581 hsa-miR-612 1 0 0
chr12:119681243|119681581 hsa-miR-637 1 0 0
chr12:119681243|119681581 hsa-miR-661 1 0 0
chr12:119681243|119681581 hsa-miR-762 1 0 0
chr12:119681243|119681581 hsa-miR-4300 0 1 0
chr12:119681243|119681581 hsa-miR-4292 1 0 0
chr12:119681243|119681581 hsa-miR-3945 0 1 0
chr12:119681243|119681581 hsa-miR-1587 1 0 0
chr12:119681243|119681581 hsa-miR-4688 1 1 0
chr12:119681243|119681581 hsa-miR-5090 1 0 0
chr12:119681243|119681581 hsa-miR-6085 1 0 0
chr12:119681243|119681581 hsa-miR-6860 1 0 0
chr12:119681243|119681581 hsa-miR-8089 1 0 0
chr12:119681243|119681581 hsa-miR-1247-3p 0 1 0
chr12:119681243|119681581 hsa-miR-125b-1-3p 1 0 0
chr12:119681243|119681581 hsa-miR-6892-3p 1 1 0
chr12:119681243|119681581 hsa-miR-7851-3p 1 1 0
chr12:119681243|119681581 hsa-miR-6875-3p 0 1 0
chr12:119681243|119681581 hsa-miR-6727-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6829-5p 0 1 0
chr12:119681243|119681581 hsa-miR-4713-5p 0 1 0
chr12:119681243|119681581 hsa-miR-378a-5p 0 1 0
chr12:119681243|119681581 hsa-miR-4733-3p 0 1 0
chr12:119681243|119681581 hsa-miR-6789-5p 1 1 0
chr12:119681243|119681581 hsa-miR-194-5p 0 1 0
chr12:119681243|119681581 hsa-miR-339-5p 1 0 0
chr12:119681243|119681581 hsa-miR-423-5p 1 0 0
chr12:119681243|119681581 hsa-miR-331-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6758-3p 0 1 0
chr12:119681243|119681581 hsa-miR-3670 0 1 0
chr12:119681243|119681581 hsa-miR-4645-3p 0 1 0
chr12:119681243|119681581 hsa-miR-642a-5p 0 1 0
chr12:119681243|119681581 hsa-miR-6775-5p 1 0 0
chr12:119681243|119681581 hsa-miR-5001-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6726-5p 0 1 0
chr12:119681243|119681581 hsa-miR-6743-5p 1 1 0
chr12:119681243|119681581 hsa-miR-6813-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6774-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6797-5p 1 0 0
chr12:119681243|119681581 hsa-miR-3620-5p 1 0 0
chr12:119681243|119681581 hsa-miR-328-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6735-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6848-5p 1 0 0
chr12:119681243|119681581 hsa-miR-1266-5p 1 0 0
chr12:119681243|119681581 hsa-miR-6736-5p 1 0 0
chr12:119681243|119681581 hsa-miR-4646-5p 0 1 0
chr12:119681243|119681581 hsa-miR-6769b-3p 0 1 0
chr12:119681243|119681581 hsa-miR-6783-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:119681243|119681581
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence MDQSRLLYTQLSFPGVATDVPTSPGCCESAEAPVMPFAPGGRGRSELPGFQYLLGIPEFGGTLFCDFSKQ
Nucleotide Sequence TTGGACCAAAGCAGACTTCTTTATACGCAGCTCAGTTTCCCGGGAGTCGCCACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTATGCCCTTTGCTCCTGGTGGGAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTACCCTTTTTTGTGACTTTTCAAAACAGTGA
CircID chr12:119681243|119681581
ORF Type ORF2
Protein Length 108
Nucleotide Length 324
Protein Sequence MPLVSKTAAVAVAYSERNVELDSSLLSLGQEDVLWTKADFFIRSSVSRESPQMYPLAQVAVSQRKLPLCPLLLVGEGGVSSLGSSIYLVYLSLGVPFFVTFQNSELLS
Nucleotide Sequence CTGCCCCTAGTTAGCAAGACTGCAGCAGTTGCTGTTGCTTATTCTGAAAGGAATGTAGAACTTGACAGCAGCCTTCTGAGTCTGGGTCAGGAAGATGTCCTTTGGACCAAAGCAGACTTCTTTATACGCAGCTCAGTTTCCCGGGAGTCGCCACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTATGCCCTTTGCTCCTGGTGGGAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTACCCTTTTTTGTGACTTTTCAAAACAGTGAATTACTGTCA
CircID chr12:119681243|119681581
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLWSKGHLPDPDSEGCCQVLHSFQNKQQQLLQSC
Nucleotide Sequence CTGCTTTGGTCCAAAGGACATCTTCCTGACCCAGACTCAGAAGGCTGCTGTCAAGTTCTACATTCCTTTCAGAATAAGCAACAGCAACTGCTGCAGTCTTGCTAA
CircID chr12:119681243|119681581
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MKSHKKGYPQTQVYQVNTGTQGAHSSLSHQEQRA
Nucleotide Sequence TTGAAAAGTCACAAAAAAGGGTACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCCCACCAGGAGCAAAGGGCATAA
CircID chr12:119681243|119681581
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MTQTQKAAVKFYIPFRISNSNCCSLAN
Nucleotide Sequence CTGACCCAGACTCAGAAGGCTGCTGTCAAGTTCTACATTCCTTTCAGAATAAGCAACAGCAACTGCTGCAGTCTTGCTAACTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab