CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120155241|120155719
Strand -
CircType exon
Host Gene ENSG00000089154.10;
Algorism find_circ;CIRI2;CIRC
Sequence GGGCTGATGGAACTCCACATGGTATTGCCAGCACCTGATACTGATGAGAAGAATGGCCTGAACCTTCTGCGGAGACTCTGGGTGGTCAAGTTTGACAAGGAGGAGGAGATCCGGAAGCTGGCTGAGAGAGGGCTGGGCTGGCAGGGCAAGTGCTGCAGATCTTTGTCTAAGCAGCCCCTGCCTTGGATCTCCCAGCTCTGGTCAATGATGGGCCTAGACCTGCAGCCAGACCTCTGCTCCTTGCTGATTGACGACGTGATCTATCATGAGGCGGCTGTAAGGCAGGCAGGGGCCGAAGCCCTCTCCCAAGCAGTGGCACGTTACCAGCGGCAGGCGGCGGAGGTTATGGGCAGGCTCATGGAGATTTACCAGGAAAAGCTCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120155241|120155719 hsa-miR-564 1 1 1
chr12:120155241|120155719 hsa-miR-658 1 1 1
chr12:120155241|120155719 hsa-miR-765 1 1 1
chr12:120155241|120155719 hsa-miR-3937 1 1 1
chr12:120155241|120155719 hsa-miR-4467 1 1 1
chr12:120155241|120155719 hsa-miR-4656 1 1 1
chr12:120155241|120155719 hsa-miR-4734 1 1 1
chr12:120155241|120155719 hsa-miR-4736 1 1 1
chr12:120155241|120155719 hsa-miR-6125 1 1 1
chr12:120155241|120155719 hsa-miR-7150 1 1 1
chr12:120155241|120155719 hsa-miR-128-1-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6765-5p 1 1 1
chr12:120155241|120155719 hsa-miR-671-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6861-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6894-5p 1 1 1
chr12:120155241|120155719 hsa-miR-25-5p 1 1 1
chr12:120155241|120155719 hsa-miR-4695-5p 1 1 1
chr12:120155241|120155719 hsa-miR-3677-5p 1 1 1
chr12:120155241|120155719 hsa-miR-7160-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6820-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6721-5p 1 1 1
chr12:120155241|120155719 hsa-miR-6087 1 1 1
chr12:120155241|120155719 hsa-miR-6798-5p 1 1 1
chr12:120155241|120155719 hsa-miR-3150b-3p 1 1 1
chr12:120155241|120155719 hsa-miR-5006-5p 1 1 1
chr12:120155241|120155719 hsa-miR-5088-5p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:120155241|120155719 SLBP 0 0 1
chr12:120155241|120155719 MOV10 3 6 3
chr12:120155241|120155719 ELAVL1 2 0 3
chr12:120155241|120155719 NUMA1 0 1 0
chr12:120155241|120155719 SF3B4 0 2 0
chr12:120155241|120155719 FAM120A 0 1 1
chr12:120155241|120155719 CELF2 0 2 0
chr12:120155241|120155719 FKBP4 1 0 1
chr12:120155241|120155719 CNBP 1 1 2
chr12:120155241|120155719 TNRC6A 0 1 0
chr12:120155241|120155719 FMR1 13 10 13
chr12:120155241|120155719 CPSF6 1 0 0
chr12:120155241|120155719 U2AF2 5 14 0
chr12:120155241|120155719 FUS 2 4 0
chr12:120155241|120155719 GNL3 1 0 0
chr12:120155241|120155719 DGCR8 1 0 0
chr12:120155241|120155719 SRSF7 1 0 1
chr12:120155241|120155719 SRSF1 5 0 3
chr12:120155241|120155719 NOP58 2 5 3
chr12:120155241|120155719 SRSF3 1 0 0
chr12:120155241|120155719 U2AF1 2 0 0
chr12:120155241|120155719 NOP56 2 0 2
chr12:120155241|120155719 SRSF9 0 1 1
chr12:120155241|120155719 DDX54 5 4 11
chr12:120155241|120155719 SMNDC1 2 1 1
chr12:120155241|120155719 RBM10 8 12 0
chr12:120155241|120155719 HNRNPM 2 0 0
chr12:120155241|120155719 SF3A3 1 0 0
chr12:120155241|120155719 RNF219 0 1 0
chr12:120155241|120155719 PTBP1 0 2 0
chr12:120155241|120155719 HNRNPC 12 4 2
chr12:120155241|120155719 TRA2A 2 0 1
chr12:120155241|120155719 ZNF184 0 0 1
chr12:120155241|120155719 HNRNPA1 1 0 0
chr12:120155241|120155719 ZC3H7B 0 1 0
chr12:120155241|120155719 LARP7 1 0 1
chr12:120155241|120155719 SBDS 0 0 1
chr12:120155241|120155719 MSI2 1 0 2
chr12:120155241|120155719 ACIN1 1 0 1
chr12:120155241|120155719 RANGAP1 2 1 3
chr12:120155241|120155719 FXR1 4 2 2
chr12:120155241|120155719 FXR2 3 4 5
chr12:120155241|120155719 SND1 2 1 1
chr12:120155241|120155719 IGF2BP1 1 1 0
chr12:120155241|120155719 DICER1 0 1 0
chr12:120155241|120155719 IGF2BP3 2 2 2
chr12:120155241|120155719 IGF2BP2 5 0 8
chr12:120155241|120155719 FTO 0 1 0
chr12:120155241|120155719 TARDBP 0 2 0
chr12:120155241|120155719 BUD13 2 1 1
chr12:120155241|120155719 PRPF8 1 3 0
chr12:120155241|120155719 SLTM 0 0 1
chr12:120155241|120155719 DDX42 1 0 0
chr12:120155241|120155719 CSTF2T 1 2 2
chr12:120155241|120155719 VIM 2 0 0
chr12:120155241|120155719 RBM22 1 1 0
chr12:120155241|120155719 XRN2 0 1 0
chr12:120155241|120155719 DKC1 1 0 0
chr12:120155241|120155719 HNRNPK 0 3 0
chr12:120155241|120155719 AGO2 1 1 1
chr12:120155241|120155719 AGO1 0 0 1
chr12:120155241|120155719 EIF4A3 9 9 5
chr12:120155241|120155719 FBL 3 4 5
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab