CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120367280|120367492
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCCTCCTCTGACTTTTCTACTTTTCCATCTGCCCTGGAGCCAGCGCCCCCTGCAGGGTCTAAGACACGAAGGAGCTGTGGGACAACAGCAAAATGTTCCATGAGTTTGAATGCCAACCAAGCAGCTTCTCCTAAGATCTAGTCTTCCGAAGGGTCGTTTCCAGGCAAGCTAGAGCCTTTCTCATAAATCCCCTCCGTGGGCAAAGCAGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120367280|120367492 hsa-miR-187-5p 0 0 1
chr12:120367280|120367492 hsa-miR-187-3p 0 0 1
chr12:120367280|120367492 hsa-miR-149-5p 0 0 1
chr12:120367280|120367492 hsa-miR-149-3p 0 0 1
chr12:120367280|120367492 hsa-miR-492 0 0 1
chr12:120367280|120367492 hsa-miR-504-5p 0 0 1
chr12:120367280|120367492 hsa-miR-504-3p 0 0 1
chr12:120367280|120367492 hsa-miR-539-5p 0 0 1
chr12:120367280|120367492 hsa-miR-539-3p 0 0 1
chr12:120367280|120367492 hsa-miR-661 0 0 1
chr12:120367280|120367492 hsa-miR-1205 0 1 1
chr12:120367280|120367492 hsa-miR-1251-5p 0 0 1
chr12:120367280|120367492 hsa-miR-1251-3p 0 0 1
chr12:120367280|120367492 hsa-miR-1256 0 0 1
chr12:120367280|120367492 hsa-miR-548n 0 0 1
chr12:120367280|120367492 hsa-miR-28-3p 0 0 1
chr12:120367280|120367492 hsa-miR-490-5p 0 0 1
chr12:120367280|120367492 hsa-miR-188-3p 0 0 1
chr12:120367280|120367492 hsa-miR-875-3p 0 0 1
chr12:120367280|120367492 hsa-miR-7 0 0 1
chr12:120367280|120367492 hsa-miR-1254 0 0 1
chr12:120367280|120367492 hsa-miR-637 1 0 0
chr12:120367280|120367492 hsa-miR-658 1 0 0
chr12:120367280|120367492 hsa-miR-765 1 0 0
chr12:120367280|120367492 hsa-miR-892b 1 0 0
chr12:120367280|120367492 hsa-miR-3132 1 0 0
chr12:120367280|120367492 hsa-miR-3141 1 1 0
chr12:120367280|120367492 hsa-miR-4448 0 1 0
chr12:120367280|120367492 hsa-miR-4450 1 1 0
chr12:120367280|120367492 hsa-miR-4487 1 0 0
chr12:120367280|120367492 hsa-miR-4488 1 1 0
chr12:120367280|120367492 hsa-miR-4498 1 0 0
chr12:120367280|120367492 hsa-miR-4534 1 0 0
chr12:120367280|120367492 hsa-miR-4657 1 0 0
chr12:120367280|120367492 hsa-miR-4688 1 0 0
chr12:120367280|120367492 hsa-miR-4734 1 0 0
chr12:120367280|120367492 hsa-miR-4739 1 0 0
chr12:120367280|120367492 hsa-miR-4759 0 1 0
chr12:120367280|120367492 hsa-miR-5090 1 0 0
chr12:120367280|120367492 hsa-miR-6124 1 1 0
chr12:120367280|120367492 hsa-miR-8072 1 0 0
chr12:120367280|120367492 hsa-miR-92a-2-5p 1 0 0
chr12:120367280|120367492 hsa-miR-7-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6734-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6857-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6822-3p 0 1 0
chr12:120367280|120367492 hsa-miR-139-3p 1 0 0
chr12:120367280|120367492 hsa-miR-4722-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6730-5p 1 1 0
chr12:120367280|120367492 hsa-miR-197-5p 1 0 0
chr12:120367280|120367492 hsa-miR-3180-3p 1 0 0
chr12:120367280|120367492 hsa-miR-4725-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6732-5p 1 0 0
chr12:120367280|120367492 hsa-miR-2467-5p 1 1 0
chr12:120367280|120367492 hsa-miR-6798-5p 1 0 0
chr12:120367280|120367492 hsa-miR-182-3p 0 1 0
chr12:120367280|120367492 hsa-miR-5006-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6786-5p 1 0 0
chr12:120367280|120367492 hsa-miR-7109-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1226-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6784-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6753-5p 1 0 0
chr12:120367280|120367492 hsa-miR-30c-2-3p 0 1 0
chr12:120367280|120367492 hsa-miR-3127-5p 1 0 0
chr12:120367280|120367492 hsa-miR-5580-5p 0 1 0
chr12:120367280|120367492 hsa-miR-4743-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1266-3p 1 0 0
chr12:120367280|120367492 hsa-miR-4715-5p 1 0 0
chr12:120367280|120367492 hsa-miR-4646-3p 0 1 0
chr12:120367280|120367492 hsa-miR-1306-3p 1 0 0
chr12:120367280|120367492 hsa-miR-4433b-5p 0 1 0
chr12:120367280|120367492 hsa-miR-4763-3p 1 0 0
chr12:120367280|120367492 hsa-miR-6787-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6865-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6893-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6775-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6743-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6752-5p 1 1 0
chr12:120367280|120367492 hsa-miR-6803-5p 1 0 0
chr12:120367280|120367492 hsa-miR-7110-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1249-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6722-3p 1 1 0
chr12:120367280|120367492 hsa-miR-6797-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6879-5p 1 1 0
chr12:120367280|120367492 hsa-miR-4728-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6780b-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6836-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1237-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1909-3p 0 1 0
chr12:120367280|120367492 hsa-miR-328-5p 1 0 0
chr12:120367280|120367492 hsa-miR-4632-5p 1 0 0
chr12:120367280|120367492 hsa-miR-4685-5p 1 1 0
chr12:120367280|120367492 hsa-miR-6735-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6795-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6846-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6848-5p 1 0 0
chr12:120367280|120367492 hsa-miR-6887-5p 1 0 0
chr12:120367280|120367492 hsa-miR-4436b-3p 1 1 0
chr12:120367280|120367492 hsa-miR-4697-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6831-5p 1 1 0
chr12:120367280|120367492 hsa-miR-939-5p 1 0 0
chr12:120367280|120367492 hsa-miR-1914-3p 1 0 0
chr12:120367280|120367492 hsa-miR-498-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6891-5p 1 0 0
chr12:120367280|120367492 hsa-miR-3184-5p 1 0 0
chr12:120367280|120367492 hsa-miR-10400-3p 1 0 0
chr12:120367280|120367492 hsa-miR-6837-5p 0 1 0
chr12:120367280|120367492 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:120367280|120367492
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MEPAPPAGSKTRRSCGTTAKCSMSLNANQAASPKI
Nucleotide Sequence CTGGAGCCAGCGCCCCCTGCAGGGTCTAAGACACGAAGGAGCTGTGGGACAACAGCAAAATGTTCCATGAGTTTGAATGCCAACCAAGCAGCTTCTCCTAAGATCTAG
CircID chr12:120367280|120367492
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MTFLLFHLPWSQRPLQGLRHEGAVGQQQNVP
Nucleotide Sequence CTGACTTTTCTACTTTTCCATCTGCCCTGGAGCCAGCGCCCCCTGCAGGGTCTAAGACACGAAGGAGCTGTGGGACAACAGCAAAATGTTCCATGA
CircID chr12:120367280|120367492
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MAFKLMEHFAVVPQLLRVLDPAGGAGSRADGKVEKSEEG
Nucleotide Sequence TTGGCATTCAAACTCATGGAACATTTTGCTGTTGTCCCACAGCTCCTTCGTGTCTTAGACCCTGCAGGGGGCGCTGGCTCCAGGGCAGATGGAAAAGTAGAAAAGTCAGAGGAGGGG
CircID chr12:120367280|120367492
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MLCPRRGFMRKALACLETTLRKTRS
Nucleotide Sequence CTGCTTTGCCCACGGAGGGGATTTATGAGAAAGGCTCTAGCTTGCCTGGAAACGACCCTTCGGAAGACTAGATCTTAG
CircID chr12:120367280|120367492
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MVGIQTHGTFCCCPTAPSCLRPCRGRWLQGRWKSRKVRGG
Nucleotide Sequence TTGGTTGGCATTCAAACTCATGGAACATTTTGCTGTTGTCCCACAGCTCCTTCGTGTCTTAGACCCTGCAGGGGGCGCTGGCTCCAGGGCAGATGGAAAAGTAGAAAAGTCAGAGGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab