CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120463503|120463679
Strand +
CircType exon
Host Gene ENSG00000257218.4;
Algorism CIRI2;
Sequence CTGGAGAGAATACTAGTGCAGTCGGTCTTCATACCACCCCATTCACAACCAGCTTAAATGGCAGTATCCCTCTGTGAACTCAACTACCCCTCCTGTGGGTCCAGGCTGAGCTCTACAGGTCAGCCTCTTCATCTCAGCCCTTCTAGGTCCTGCTGTCAGGGCTGAGCTGTCACTTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120463503|120463679 hsa-miR-27a-5p 0 0 1
chr12:120463503|120463679 hsa-miR-27a-3p 0 0 1
chr12:120463503|120463679 hsa-miR-214-5p 0 0 1
chr12:120463503|120463679 hsa-miR-214-3p 0 0 1
chr12:120463503|120463679 hsa-miR-27b-5p 0 0 1
chr12:120463503|120463679 hsa-miR-27b-3p 0 0 1
chr12:120463503|120463679 hsa-miR-143-5p 0 0 1
chr12:120463503|120463679 hsa-miR-143-3p 0 0 1
chr12:120463503|120463679 hsa-miR-573 0 1 1
chr12:120463503|120463679 hsa-miR-608 1 1 1
chr12:120463503|120463679 hsa-miR-630 0 0 1
chr12:120463503|120463679 hsa-miR-631 0 0 1
chr12:120463503|120463679 hsa-miR-766-5p 0 0 1
chr12:120463503|120463679 hsa-miR-766-3p 0 0 1
chr12:120463503|120463679 hsa-miR-1286 0 1 1
chr12:120463503|120463679 hsa-miR-1293 1 1 1
chr12:120463503|120463679 hsa-miR-1257 0 0 1
chr12:120463503|120463679 hsa-miR-485-5p 0 1 1
chr12:120463503|120463679 hsa-miR-513a-5p 0 0 1
chr12:120463503|120463679 hsa-miR-342-5p 0 0 1
chr12:120463503|120463679 hsa-miR-542-3p 0 0 1
chr12:120463503|120463679 hsa-miR-1254 0 0 1
chr12:120463503|120463679 hsa-miR-453 0 0 1
chr12:120463503|120463679 hsa-miR-1291 0 1 0
chr12:120463503|120463679 hsa-miR-711 1 1 0
chr12:120463503|120463679 hsa-miR-3132 1 0 0
chr12:120463503|120463679 hsa-miR-3154 1 1 0
chr12:120463503|120463679 hsa-miR-3929 0 1 0
chr12:120463503|120463679 hsa-miR-3936 1 0 0
chr12:120463503|120463679 hsa-miR-4478 0 1 0
chr12:120463503|120463679 hsa-miR-4525 1 0 0
chr12:120463503|120463679 hsa-miR-4526 1 1 0
chr12:120463503|120463679 hsa-miR-4651 1 1 0
chr12:120463503|120463679 hsa-miR-4656 1 1 0
chr12:120463503|120463679 hsa-miR-4741 1 0 0
chr12:120463503|120463679 hsa-miR-5194 1 0 0
chr12:120463503|120463679 hsa-miR-6088 0 1 0
chr12:120463503|120463679 hsa-miR-6127 1 0 0
chr12:120463503|120463679 hsa-miR-6165 0 1 0
chr12:120463503|120463679 hsa-miR-8073 0 1 0
chr12:120463503|120463679 hsa-miR-512-5p 0 1 0
chr12:120463503|120463679 hsa-miR-6825-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6854-5p 0 1 0
chr12:120463503|120463679 hsa-miR-4709-3p 0 1 0
chr12:120463503|120463679 hsa-miR-4722-5p 1 0 0
chr12:120463503|120463679 hsa-miR-197-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6742-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6793-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6796-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6732-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6798-5p 1 0 0
chr12:120463503|120463679 hsa-miR-3126-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6782-5p 1 1 0
chr12:120463503|120463679 hsa-miR-6753-5p 1 0 0
chr12:120463503|120463679 hsa-miR-4690-5p 1 0 0
chr12:120463503|120463679 hsa-miR-3690 0 1 0
chr12:120463503|120463679 hsa-miR-4446-3p 0 1 0
chr12:120463503|120463679 hsa-miR-149-3p 1 0 0
chr12:120463503|120463679 hsa-miR-378a-5p 0 1 0
chr12:120463503|120463679 hsa-miR-423-5p 0 1 0
chr12:120463503|120463679 hsa-miR-6814-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6812-5p 1 1 0
chr12:120463503|120463679 hsa-miR-6737-5p 1 1 0
chr12:120463503|120463679 hsa-miR-6752-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6819-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6842-5p 1 0 0
chr12:120463503|120463679 hsa-miR-1249-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6797-5p 1 0 0
chr12:120463503|120463679 hsa-miR-4728-5p 1 0 0
chr12:120463503|120463679 hsa-miR-328-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6738-5p 1 1 0
chr12:120463503|120463679 hsa-miR-6794-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6855-5p 1 0 0
chr12:120463503|120463679 hsa-miR-3116 0 1 0
chr12:120463503|120463679 hsa-miR-6891-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6785-5p 1 0 0
chr12:120463503|120463679 hsa-miR-6724-5p 1 1 0
chr12:120463503|120463679 hsa-miR-6817-5p 1 1 0
chr12:120463503|120463679 hsa-miR-369-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:120463503|120463679
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MAVSLCELNYPSCGSRLSSTGQPLHLSPSRSCCQG
Nucleotide Sequence ATGGCAGTATCCCTCTGTGAACTCAACTACCCCTCCTGTGGGTCCAGGCTGAGCTCTACAGGTCAGCCTCTTCATCTCAGCCCTTCTAGGTCCTGCTGTCAGGGCTGA
CircID chr12:120463503|120463679
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MTAGPRRAEMKRLTCRAQPGPTGGVVEFTEGYCHLSWL
Nucleotide Sequence CTGACAGCAGGACCTAGAAGGGCTGAGATGAAGAGGCTGACCTGTAGAGCTCAGCCTGGACCCACAGGAGGGGTAGTTGAGTTCACAGAGGGATACTGCCATTTAAGCTGGTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab