CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120575631|120575856
Strand +
CircType exon
Host Gene ENSG00000022840.14;
Algorism CIRI2;
Sequence ACGGTCTGAATTATCACTCTCCCCGTCGCTGTCCACAGGGGCAGGAGGAACTAAGCTGTTCTCATCTAAAAAATACCAGTGTTAAAACTATAGAAACAACTCTTTTTCTAGAAACAGCCTTTTATGGAAAGAAGCCAAACTCCCCCTTCACCAGTGGACCATCCTCACCTTTCTTTGGAGCAGTTTTGGGCCACACATCTGCTTTTGCTTTTCCAACCCTCAGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120575631|120575856 hsa-miR-141-5p 0 0 1
chr12:120575631|120575856 hsa-miR-141-3p 0 0 1
chr12:120575631|120575856 hsa-miR-146a-5p 0 0 1
chr12:120575631|120575856 hsa-miR-146a-3p 0 0 1
chr12:120575631|120575856 hsa-miR-200a-5p 0 0 1
chr12:120575631|120575856 hsa-miR-200a-3p 0 0 1
chr12:120575631|120575856 hsa-miR-587 0 0 1
chr12:120575631|120575856 hsa-miR-589-5p 0 0 1
chr12:120575631|120575856 hsa-miR-589-3p 0 0 1
chr12:120575631|120575856 hsa-miR-1323 0 0 1
chr12:120575631|120575856 hsa-miR-663b 0 1 1
chr12:120575631|120575856 hsa-miR-548e-5p 0 0 1
chr12:120575631|120575856 hsa-miR-548e-3p 0 0 1
chr12:120575631|120575856 hsa-miR-548o-3p 0 0 1
chr12:120575631|120575856 hsa-miR-548p 0 0 1
chr12:120575631|120575856 hsa-miR-548o 0 0 1
chr12:120575631|120575856 hsa-miR-296-3p 1 0 1
chr12:120575631|120575856 hsa-miR-576-3p 0 0 1
chr12:120575631|120575856 hsa-miR-324-3p 0 0 1
chr12:120575631|120575856 hsa-miR-518d-5p 0 0 1
chr12:120575631|120575856 hsa-miR-519b-5p 0 0 1
chr12:120575631|120575856 hsa-miR-519c-5p 0 0 1
chr12:120575631|120575856 hsa-miR-520c-5p 0 0 1
chr12:120575631|120575856 hsa-miR-146b-5p 0 0 1
chr12:120575631|120575856 hsa-miR-548a-3p 0 0 1
chr12:120575631|120575856 hsa-miR-644 0 0 1
chr12:120575631|120575856 hsa-miR-548f 0 0 1
chr12:120575631|120575856 hsa-miR-526a 0 0 1
chr12:120575631|120575856 hsa-miR-147 0 0 1
chr12:120575631|120575856 hsa-miR-1185 0 0 1
chr12:120575631|120575856 hsa-miR-637 1 0 0
chr12:120575631|120575856 hsa-miR-658 1 0 0
chr12:120575631|120575856 hsa-miR-1293 1 0 0
chr12:120575631|120575856 hsa-miR-1275 1 0 0
chr12:120575631|120575856 hsa-miR-1976 0 1 0
chr12:120575631|120575856 hsa-miR-2278 1 1 0
chr12:120575631|120575856 hsa-miR-3138 1 1 0
chr12:120575631|120575856 hsa-miR-1193 1 1 0
chr12:120575631|120575856 hsa-miR-3175 1 0 0
chr12:120575631|120575856 hsa-miR-4299 1 0 0
chr12:120575631|120575856 hsa-miR-4326 0 1 0
chr12:120575631|120575856 hsa-miR-3907 1 0 0
chr12:120575631|120575856 hsa-miR-4483 1 0 0
chr12:120575631|120575856 hsa-miR-2392 1 0 0
chr12:120575631|120575856 hsa-miR-4525 1 0 0
chr12:120575631|120575856 hsa-miR-4651 1 0 0
chr12:120575631|120575856 hsa-miR-4689 1 0 0
chr12:120575631|120575856 hsa-miR-4710 1 0 0
chr12:120575631|120575856 hsa-miR-5192 0 1 0
chr12:120575631|120575856 hsa-miR-5698 0 1 0
chr12:120575631|120575856 hsa-miR-5787 1 0 0
chr12:120575631|120575856 hsa-miR-6086 1 0 0
chr12:120575631|120575856 hsa-miR-6124 0 1 0
chr12:120575631|120575856 hsa-miR-8072 1 0 0
chr12:120575631|120575856 hsa-miR-8075 1 0 0
chr12:120575631|120575856 hsa-miR-12119 1 0 0
chr12:120575631|120575856 hsa-miR-6734-5p 1 0 0
chr12:120575631|120575856 hsa-miR-4731-5p 1 0 0
chr12:120575631|120575856 hsa-miR-323a-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6825-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6894-5p 1 0 0
chr12:120575631|120575856 hsa-miR-125a-3p 1 0 0
chr12:120575631|120575856 hsa-miR-6728-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6804-5p 1 1 0
chr12:120575631|120575856 hsa-miR-6515-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6880-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6730-5p 1 1 0
chr12:120575631|120575856 hsa-miR-7160-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6875-3p 0 1 0
chr12:120575631|120575856 hsa-miR-8069 1 0 0
chr12:120575631|120575856 hsa-miR-3605-5p 1 1 0
chr12:120575631|120575856 hsa-miR-185-3p 1 0 0
chr12:120575631|120575856 hsa-miR-6786-5p 1 0 0
chr12:120575631|120575856 hsa-miR-1226-5p 1 0 0
chr12:120575631|120575856 hsa-miR-1908-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6823-5p 1 0 0
chr12:120575631|120575856 hsa-miR-5010-5p 1 0 0
chr12:120575631|120575856 hsa-miR-7162-3p 1 0 0
chr12:120575631|120575856 hsa-miR-6870-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6893-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6803-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6751-5p 1 0 0
chr12:120575631|120575856 hsa-miR-7111-5p 1 1 0
chr12:120575631|120575856 hsa-miR-5196-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6780b-5p 1 0 0
chr12:120575631|120575856 hsa-miR-10396b-5p 1 0 0
chr12:120575631|120575856 hsa-miR-675-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6777-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6795-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6846-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6848-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6858-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6883-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6887-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6889-5p 0 1 0
chr12:120575631|120575856 hsa-miR-6511a-5p 0 1 0
chr12:120575631|120575856 hsa-miR-3940-5p 1 0 0
chr12:120575631|120575856 hsa-miR-6855-5p 1 0 0
chr12:120575631|120575856 hsa-miR-3679-5p 1 0 0
chr12:120575631|120575856 hsa-miR-3059-5p 1 0 0
chr12:120575631|120575856 hsa-miR-7155-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:120575631|120575856
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MERSQTPPSPVDHPHLSLEQFWATHLLLLFQPSA
Nucleotide Sequence ATGGAAAGAAGCCAAACTCCCCCTTCACCAGTGGACCATCCTCACCTTTCTTTGGAGCAGTTTTGGGCCACACATCTGCTTTTGCTTTTCCAACCCTCAGCA
CircID chr12:120575631|120575856
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MNYHSPRRCPQGQEELSCSHLKNTSVKTIETTLFLETAFYGKKPNSPFTSGPSSPFFGAVLGHTSAFAFPTLS
Nucleotide Sequence CTGAATTATCACTCTCCCCGTCGCTGTCCACAGGGGCAGGAGGAACTAAGCTGTTCTCATCTAAAAAATACCAGTGTTAAAACTATAGAAACAACTCTTTTTCTAGAAACAGCCTTTTATGGAAAGAAGCCAAACTCCCCCTTCACCAGTGGACCATCCTCACCTTTCTTTGGAGCAGTTTTGGGCCACACATCTGCTTTTGCTTTTCCAACCCTCAGC
CircID chr12:120575631|120575856
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLRVGKAKADVWPKTAPKKGEDGPLVKGEFGFFP
Nucleotide Sequence ATGCTGAGGGTTGGAAAAGCAAAAGCAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGGTGAGGATGGTCCACTGGTGAAGGGGGAGTTTGGCTTCTTTCCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab