CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120697405|120697586
Strand -
CircType exon
Host Gene ENSG00000110917.6;
Algorism CIRI2;
Sequence GGGGATTTGGGGTTCTCTGCTTGAATGTCTTCTCCTTTACCACCTCACCTTGTTGGTACCTCCCTCCCTGGATCTCTGAGCCAGCAGCCAGGAGGACCTGACCCAGCAGTTCTTTACTGGCCCCTTTGTAGGGCCTTGCTGCCAGGGGGCAGGGATGCTTTCCAGCCTGCAGCAACAGAACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120697405|120697586 hsa-miR-181c-5p 0 0 1
chr12:120697405|120697586 hsa-miR-181c-3p 0 0 1
chr12:120697405|120697586 hsa-miR-149-5p 0 0 1
chr12:120697405|120697586 hsa-miR-149-3p 0 0 1
chr12:120697405|120697586 hsa-miR-186-5p 0 0 1
chr12:120697405|120697586 hsa-miR-186-3p 0 0 1
chr12:120697405|120697586 hsa-miR-181d-5p 0 0 1
chr12:120697405|120697586 hsa-miR-181d-3p 0 0 1
chr12:120697405|120697586 hsa-miR-498-5p 0 0 1
chr12:120697405|120697586 hsa-miR-498-3p 0 0 1
chr12:120697405|120697586 hsa-miR-589-5p 0 0 1
chr12:120697405|120697586 hsa-miR-589-3p 0 0 1
chr12:120697405|120697586 hsa-miR-604 0 0 1
chr12:120697405|120697586 hsa-miR-605-5p 0 0 1
chr12:120697405|120697586 hsa-miR-605-3p 0 0 1
chr12:120697405|120697586 hsa-miR-624-5p 0 0 1
chr12:120697405|120697586 hsa-miR-624-3p 0 0 1
chr12:120697405|120697586 hsa-miR-641 0 1 1
chr12:120697405|120697586 hsa-miR-647 0 0 1
chr12:120697405|120697586 hsa-miR-1205 0 0 1
chr12:120697405|120697586 hsa-miR-1294 0 0 1
chr12:120697405|120697586 hsa-miR-1253 0 0 1
chr12:120697405|120697586 hsa-miR-1267 0 0 1
chr12:120697405|120697586 hsa-miR-1321 0 0 1
chr12:120697405|120697586 hsa-miR-1283 0 0 1
chr12:120697405|120697586 hsa-miR-885-3p 0 0 1
chr12:120697405|120697586 hsa-miR-324-5p 0 0 1
chr12:120697405|120697586 hsa-miR-331-3p 0 0 1
chr12:120697405|120697586 hsa-miR-875-3p 0 0 1
chr12:120697405|120697586 hsa-miR-524-5p 0 1 1
chr12:120697405|120697586 hsa-miR-324-3p 0 0 1
chr12:120697405|120697586 hsa-miR-520d-5p 0 1 1
chr12:120697405|120697586 hsa-miR-181a 0 0 1
chr12:120697405|120697586 hsa-miR-181b 0 0 1
chr12:120697405|120697586 hsa-miR-24 0 0 1
chr12:120697405|120697586 hsa-miR-608 1 0 0
chr12:120697405|120697586 hsa-miR-1913 0 1 0
chr12:120697405|120697586 hsa-miR-4313 0 1 0
chr12:120697405|120697586 hsa-miR-4270 1 0 0
chr12:120697405|120697586 hsa-miR-4281 1 0 0
chr12:120697405|120697586 hsa-miR-3907 1 0 0
chr12:120697405|120697586 hsa-miR-3978 0 1 0
chr12:120697405|120697586 hsa-miR-4688 1 0 0
chr12:120697405|120697586 hsa-miR-4689 1 0 0
chr12:120697405|120697586 hsa-miR-4734 1 0 0
chr12:120697405|120697586 hsa-miR-4739 1 1 0
chr12:120697405|120697586 hsa-miR-6133 1 0 0
chr12:120697405|120697586 hsa-miR-6134 0 1 0
chr12:120697405|120697586 hsa-miR-8073 0 1 0
chr12:120697405|120697586 hsa-miR-8085 1 0 0
chr12:120697405|120697586 hsa-miR-6825-5p 1 0 0
chr12:120697405|120697586 hsa-miR-4687-3p 1 0 0
chr12:120697405|120697586 hsa-miR-125a-3p 1 0 0
chr12:120697405|120697586 hsa-miR-6799-5p 1 1 0
chr12:120697405|120697586 hsa-miR-3692-5p 0 1 0
chr12:120697405|120697586 hsa-miR-3064-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6760-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6782-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6888-5p 1 0 0
chr12:120697405|120697586 hsa-miR-7855-5p 1 0 0
chr12:120697405|120697586 hsa-miR-5008-5p 1 0 0
chr12:120697405|120697586 hsa-miR-4640-5p 1 1 0
chr12:120697405|120697586 hsa-miR-5580-5p 0 1 0
chr12:120697405|120697586 hsa-miR-3162-5p 1 0 0
chr12:120697405|120697586 hsa-miR-660-3p 0 1 0
chr12:120697405|120697586 hsa-miR-6752-3p 0 1 0
chr12:120697405|120697586 hsa-miR-7113-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6812-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6865-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6754-5p 1 1 0
chr12:120697405|120697586 hsa-miR-6815-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6851-5p 0 1 0
chr12:120697405|120697586 hsa-miR-11181-3p 1 0 0
chr12:120697405|120697586 hsa-miR-1249-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6780a-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6797-5p 0 1 0
chr12:120697405|120697586 hsa-miR-4728-5p 1 1 0
chr12:120697405|120697586 hsa-miR-6780b-5p 1 1 0
chr12:120697405|120697586 hsa-miR-4685-5p 1 0 0
chr12:120697405|120697586 hsa-miR-4725-3p 1 0 0
chr12:120697405|120697586 hsa-miR-4726-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6777-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6883-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6887-5p 1 0 0
chr12:120697405|120697586 hsa-miR-6845-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6511b-5p 0 1 0
chr12:120697405|120697586 hsa-miR-3085-5p 1 0 0
chr12:120697405|120697586 hsa-miR-3173-3p 0 1 0
chr12:120697405|120697586 hsa-miR-6762-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6529-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6837-5p 1 0 0
chr12:120697405|120697586 hsa-miR-500b-5p 0 1 0
chr12:120697405|120697586 hsa-miR-3085-3p 0 1 0
chr12:120697405|120697586 hsa-miR-10394-5p 0 1 0
chr12:120697405|120697586 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:120697405|120697586
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MSSPLPPHLVGTSLPGSLSQQPGGPDPAVLYWPLCRALLPGGRDAFQPAATE
Nucleotide Sequence ATGTCTTCTCCTTTACCACCTCACCTTGTTGGTACCTCCCTCCCTGGATCTCTGAGCCAGCAGCCAGGAGGACCTGACCCAGCAGTTCTTTACTGGCCCCTTTGTAGGGCCTTGCTGCCAGGGGGCAGGGATGCTTTCCAGCCTGCAGCAACAGAA
CircID chr12:120697405|120697586
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MTQQFFTGPFVGPCCQGAGMLSSLQQQN
Nucleotide Sequence CTGACCCAGCAGTTCTTTACTGGCCCCTTTGTAGGGCCTTGCTGCCAGGGGGCAGGGATGCTTTCCAGCCTGCAGCAACAGAAC
CircID chr12:120697405|120697586
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MNVFSFTTSPCWYLPPWISEPAARRT
Nucleotide Sequence TTGAATGTCTTCTCCTTTACCACCTCACCTTGTTGGTACCTCCCTCCCTGGATCTCTGAGCCAGCAGCCAGGAGGACCTGA
CircID chr12:120697405|120697586
ORF Type ORF4
Protein Length 59
Nucleotide Length 177
Protein Sequence MLLQAGKHPCPLAARPYKGASKELLGQVLLAAGSEIQGGRYQQGEVVKEKTFKQRTPNP
Nucleotide Sequence CTGTTGCTGCAGGCTGGAAAGCATCCCTGCCCCCTGGCAGCAAGGCCCTACAAAGGGGCCAGTAAAGAACTGCTGGGTCAGGTCCTCCTGGCTGCTGGCTCAGAGATCCAGGGAGGGAGGTACCAACAAGGTGAGGTGGTAAAGGAGAAGACATTCAAGCAGAGAACCCCAAATCCC
CircID chr12:120697405|120697586
ORF Type ORF5
Protein Length 42
Nucleotide Length 129
Protein Sequence MESIPAPWQQGPTKGPVKNCWVRSSWLLAQRSREGGTNKVRW
Nucleotide Sequence CTGGAAAGCATCCCTGCCCCCTGGCAGCAAGGCCCTACAAAGGGGCCAGTAAAGAACTGCTGGGTCAGGTCCTCCTGGCTGCTGGCTCAGAGATCCAGGGAGGGAGGTACCAACAAGGTGAGGTGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab