CircRNA Information

General Information
circRNA Basic Information
CircID chr12:120700048|120700170
Strand +
CircType exon
Host Gene ENSG00000110917.6;
Algorism CIRI2;
Sequence CGGGGTGGGTCCTTCCCCAACCCCTAGGGAGGGCAGAGAACCTGCTGATTCTTTCCCTGGGTTTCCCAAGGTGAGCCAATTTCTAGGGAAAGGGATTTTAGCACTAGGAAAAGGAAAATACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:120700048|120700170 hsa-miR-204-5p 0 0 1
chr12:120700048|120700170 hsa-miR-204-3p 0 0 1
chr12:120700048|120700170 hsa-miR-211-5p 0 0 1
chr12:120700048|120700170 hsa-miR-211-3p 0 0 1
chr12:120700048|120700170 hsa-miR-214-5p 0 0 1
chr12:120700048|120700170 hsa-miR-214-3p 0 0 1
chr12:120700048|120700170 hsa-miR-186-5p 0 0 1
chr12:120700048|120700170 hsa-miR-186-3p 0 0 1
chr12:120700048|120700170 hsa-miR-384 0 0 1
chr12:120700048|120700170 hsa-miR-520f-5p 0 0 1
chr12:120700048|120700170 hsa-miR-520f-3p 0 0 1
chr12:120700048|120700170 hsa-miR-605-5p 0 0 1
chr12:120700048|120700170 hsa-miR-605-3p 0 0 1
chr12:120700048|120700170 hsa-miR-657 1 0 1
chr12:120700048|120700170 hsa-miR-922 0 0 1
chr12:120700048|120700170 hsa-miR-512-3p 0 0 1
chr12:120700048|120700170 hsa-miR-188-5p 0 0 1
chr12:120700048|120700170 hsa-miR-324-3p 0 0 1
chr12:120700048|120700170 hsa-miR-24 0 0 1
chr12:120700048|120700170 hsa-miR-6862-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:120700048|120700170
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MAHLGKPRERISRFSALPRGWGRTHP
Nucleotide Sequence TTGGCTCACCTTGGGAAACCCAGGGAAAGAATCAGCAGGTTCTCTGCCCTCCCTAGGGGTTGGGGAAGGACCCACCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab