CircRNA Information

General Information
circRNA Basic Information
CircID chr12:121004069|121004201
Strand +
CircType exon
Host Gene ENSG00000157895.10;
Algorism CIRI2;
Sequence CTCTCCATTCCCACCAGCAAAGAGTGCTACAGCTATACCTGCAAACTGAACCCAGCCATGGGCACAGGGCTCAGCCAGCTCCAAGGACAAGGTGTCCCCCCCACCCTGGGGACAAGGCATTTCCAAGCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:121004069|121004201 hsa-miR-185-5p 0 0 1
chr12:121004069|121004201 hsa-miR-185-3p 0 0 1
chr12:121004069|121004201 hsa-miR-432-5p 0 0 1
chr12:121004069|121004201 hsa-miR-432-3p 0 0 1
chr12:121004069|121004201 hsa-miR-657 0 0 1
chr12:121004069|121004201 hsa-miR-541-5p 0 0 1
chr12:121004069|121004201 hsa-miR-541-3p 0 0 1
chr12:121004069|121004201 hsa-miR-1225-3p 0 0 1
chr12:121004069|121004201 hsa-miR-146b-3p 0 0 1
chr12:121004069|121004201 hsa-miR-654-5p 0 0 1
chr12:121004069|121004201 hsa-miR-532-5p 0 1 1
chr12:121004069|121004201 hsa-miR-1233 0 0 1
chr12:121004069|121004201 hsa-miR-138 0 0 1
chr12:121004069|121004201 hsa-miR-608 0 1 0
chr12:121004069|121004201 hsa-miR-762 1 0 0
chr12:121004069|121004201 hsa-miR-3137 1 0 0
chr12:121004069|121004201 hsa-miR-4312 0 1 0
chr12:121004069|121004201 hsa-miR-4487 0 1 0
chr12:121004069|121004201 hsa-miR-4498 1 0 0
chr12:121004069|121004201 hsa-miR-4663 0 1 0
chr12:121004069|121004201 hsa-miR-5787 1 0 0
chr12:121004069|121004201 hsa-miR-92a-1-5p 1 1 0
chr12:121004069|121004201 hsa-miR-1233-3p 0 1 0
chr12:121004069|121004201 hsa-miR-3692-5p 0 1 0
chr12:121004069|121004201 hsa-miR-3064-5p 0 1 0
chr12:121004069|121004201 hsa-miR-6842-3p 0 1 0
chr12:121004069|121004201 hsa-miR-8069 1 0 0
chr12:121004069|121004201 hsa-miR-5589-5p 0 1 0
chr12:121004069|121004201 hsa-miR-6716-5p 0 1 0
chr12:121004069|121004201 hsa-miR-6874-5p 0 1 0
chr12:121004069|121004201 hsa-miR-7109-5p 0 1 0
chr12:121004069|121004201 hsa-miR-5580-5p 0 1 0
chr12:121004069|121004201 hsa-miR-149-3p 1 0 0
chr12:121004069|121004201 hsa-miR-2355-3p 0 1 0
chr12:121004069|121004201 hsa-miR-891a-3p 1 0 0
chr12:121004069|121004201 hsa-miR-1914-5p 0 1 0
chr12:121004069|121004201 hsa-miR-6779-3p 0 1 0
chr12:121004069|121004201 hsa-miR-6787-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6756-5p 1 1 0
chr12:121004069|121004201 hsa-miR-6769a-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6803-5p 1 0 0
chr12:121004069|121004201 hsa-miR-3620-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6836-5p 1 0 0
chr12:121004069|121004201 hsa-miR-328-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6795-5p 1 1 0
chr12:121004069|121004201 hsa-miR-6848-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6887-5p 0 1 0
chr12:121004069|121004201 hsa-miR-6885-5p 1 0 0
chr12:121004069|121004201 hsa-miR-1199-5p 0 1 0
chr12:121004069|121004201 hsa-miR-4665-5p 1 0 0
chr12:121004069|121004201 hsa-miR-6766-5p 0 1 0
chr12:121004069|121004201 hsa-miR-3085-3p 0 1 0
chr12:121004069|121004201 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:121004069|121004201
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MNPAMGTGLSQLQGQGVPPTLGTRHFQAP
Nucleotide Sequence CTGAACCCAGCCATGGGCACAGGGCTCAGCCAGCTCCAAGGACAAGGTGTCCCCCCCACCCTGGGGACAAGGCATTTCCAAGCCCCA
CircID chr12:121004069|121004201
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MQTEPSHGHRAQPAPRTRCPPHPGDKAFPSP
Nucleotide Sequence CTGCAAACTGAACCCAGCCATGGGCACAGGGCTCAGCCAGCTCCAAGGACAAGGTGTCCCCCCCACCCTGGGGACAAGGCATTTCCAAGCCCC
CircID chr12:121004069|121004201
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MEMPCPQGGGDTLSLELAEPCAHGWVQFAGIAVALFAGGNGE
Nucleotide Sequence TTGGAAATGCCTTGTCCCCAGGGTGGGGGGGACACCTTGTCCTTGGAGCTGGCTGAGCCCTGTGCCCATGGCTGGGTTCAGTTTGCAGGTATAGCTGTAGCACTCTTTGCTGGTGGGAATGGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab