CircRNA Information

General Information
circRNA Basic Information
CircID chr12:121228556|121228866
Strand +
CircType exon
Host Gene ENSG00000135124.13;
Algorism CIRI2;
Sequence CTCCACGGCCATGTCCTGGAAACTGTGTCCTGCGTTCTCCACTATTTTGCCAAGACGGAATATGGGGCAGAAGGGATCTGTTTTAGCATCATAAATGCACGACTTGAGGTAAGTAGTGGTGATGTTGGGAAGGATATTCCTCCTAAAGTCGAGAGGAAGCAGAAAATCAGAGCGACGAAAACCTCAGAGAAGAGAGAAGAGCCAGAAGTTTCTCCAAGACCCTGGTGAACTCACACACCTGGCCACCACTTACTTGCTGAAATTAAATTTGGGATACCAGATGTTGTTCTTAACCAAAAGAGTGAAGTTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:121228556|121228866 hsa-miR-197-5p 0 0 1
chr12:121228556|121228866 hsa-miR-197-3p 0 0 1
chr12:121228556|121228866 hsa-miR-182-5p 0 0 1
chr12:121228556|121228866 hsa-miR-182-3p 0 0 1
chr12:121228556|121228866 hsa-miR-149-5p 0 0 1
chr12:121228556|121228866 hsa-miR-149-3p 0 0 1
chr12:121228556|121228866 hsa-miR-432-5p 0 0 1
chr12:121228556|121228866 hsa-miR-432-3p 0 0 1
chr12:121228556|121228866 hsa-miR-517-5p 0 0 1
chr12:121228556|121228866 hsa-miR-517a-3p 0 0 1
chr12:121228556|121228866 hsa-miR-517b-3p 0 0 1
chr12:121228556|121228866 hsa-miR-517c-3p 0 0 1
chr12:121228556|121228866 hsa-miR-545-5p 0 0 1
chr12:121228556|121228866 hsa-miR-545-3p 0 0 1
chr12:121228556|121228866 hsa-miR-620 0 0 1
chr12:121228556|121228866 hsa-miR-651-5p 0 0 1
chr12:121228556|121228866 hsa-miR-651-3p 0 0 1
chr12:121228556|121228866 hsa-miR-659-5p 0 0 1
chr12:121228556|121228866 hsa-miR-659-3p 0 0 1
chr12:121228556|121228866 hsa-miR-665 0 0 1
chr12:121228556|121228866 hsa-miR-760 1 0 1
chr12:121228556|121228866 hsa-miR-942-5p 0 0 1
chr12:121228556|121228866 hsa-miR-942-3p 0 0 1
chr12:121228556|121228866 hsa-miR-1181 0 0 1
chr12:121228556|121228866 hsa-miR-1182 0 1 1
chr12:121228556|121228866 hsa-miR-1226-5p 0 0 1
chr12:121228556|121228866 hsa-miR-1226-3p 0 0 1
chr12:121228556|121228866 hsa-miR-1236-5p 0 0 1
chr12:121228556|121228866 hsa-miR-1236-3p 0 0 1
chr12:121228556|121228866 hsa-miR-1237-5p 0 0 1
chr12:121228556|121228866 hsa-miR-1237-3p 0 0 1
chr12:121228556|121228866 hsa-miR-1286 0 0 1
chr12:121228556|121228866 hsa-miR-1270 0 0 1
chr12:121228556|121228866 hsa-miR-1272 0 0 1
chr12:121228556|121228866 hsa-miR-1322 0 0 1
chr12:121228556|121228866 hsa-miR-1197 0 1 1
chr12:121228556|121228866 hsa-miR-193a-5p 0 0 1
chr12:121228556|121228866 hsa-miR-501-5p 0 0 1
chr12:121228556|121228866 hsa-miR-188-5p 0 0 1
chr12:121228556|121228866 hsa-miR-324-3p 0 0 1
chr12:121228556|121228866 hsa-miR-362-5p 0 0 1
chr12:121228556|121228866 hsa-miR-516a-3p 0 1 1
chr12:121228556|121228866 hsa-miR-548b-3p 0 0 1
chr12:121228556|121228866 hsa-miR-220b 0 0 1
chr12:121228556|121228866 hsa-miR-544 0 0 1
chr12:121228556|121228866 hsa-miR-499-3p 0 0 1
chr12:121228556|121228866 hsa-miR-638 1 0 0
chr12:121228556|121228866 hsa-miR-892b 1 0 0
chr12:121228556|121228866 hsa-miR-3183 1 0 0
chr12:121228556|121228866 hsa-miR-3655 1 0 0
chr12:121228556|121228866 hsa-miR-4436a 0 1 0
chr12:121228556|121228866 hsa-miR-4531 0 1 0
chr12:121228556|121228866 hsa-miR-4669 1 0 0
chr12:121228556|121228866 hsa-miR-5705 1 0 0
chr12:121228556|121228866 hsa-miR-8081 0 1 0
chr12:121228556|121228866 hsa-miR-12115 1 1 0
chr12:121228556|121228866 hsa-miR-12119 0 1 0
chr12:121228556|121228866 hsa-miR-6089 1 0 0
chr12:121228556|121228866 hsa-miR-6880-5p 1 0 0
chr12:121228556|121228866 hsa-miR-7847-3p 1 1 0
chr12:121228556|121228866 hsa-miR-3189-5p 0 1 0
chr12:121228556|121228866 hsa-miR-6873-3p 1 0 0
chr12:121228556|121228866 hsa-miR-4728-3p 1 1 0
chr12:121228556|121228866 hsa-miR-6793-5p 1 0 0
chr12:121228556|121228866 hsa-miR-6796-5p 1 0 0
chr12:121228556|121228866 hsa-miR-877-5p 1 0 0
chr12:121228556|121228866 hsa-miR-4733-3p 0 1 0
chr12:121228556|121228866 hsa-miR-5000-3p 0 1 0
chr12:121228556|121228866 hsa-miR-6818-5p 0 1 0
chr12:121228556|121228866 hsa-miR-6738-3p 0 1 0
chr12:121228556|121228866 hsa-miR-329-5p 1 1 0
chr12:121228556|121228866 hsa-miR-589-3p 0 1 0
chr12:121228556|121228866 hsa-miR-6866-3p 0 1 0
chr12:121228556|121228866 hsa-miR-4685-5p 1 1 0
chr12:121228556|121228866 hsa-miR-4745-5p 1 0 0
chr12:121228556|121228866 hsa-miR-1238-5p 1 0 0
chr12:121228556|121228866 hsa-miR-3059-5p 0 1 0
chr12:121228556|121228866 hsa-miR-7162-5p 0 1 0
chr12:121228556|121228866 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:121228556|121228866
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence METVSCVLHYFAKTEYGAEGICFSIINARLEVSSGDVGKDIPPKVERKQKIRATKTSEKREEPEVSPRPW
Nucleotide Sequence CTGGAAACTGTGTCCTGCGTTCTCCACTATTTTGCCAAGACGGAATATGGGGCAGAAGGGATCTGTTTTAGCATCATAAATGCACGACTTGAGGTAAGTAGTGGTGATGTTGGGAAGGATATTCCTCCTAAAGTCGAGAGGAAGCAGAAAATCAGAGCGACGAAAACCTCAGAGAAGAGAGAAGAGCCAGAAGTTTCTCCAAGACCCTGGTGA
CircID chr12:121228556|121228866
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSWKLCPAFSTILPRRNMGQKGSVLAS
Nucleotide Sequence ATGTCCTGGAAACTGTGTCCTGCGTTCTCCACTATTTTGCCAAGACGGAATATGGGGCAGAAGGGATCTGTTTTAGCATCATAA
CircID chr12:121228556|121228866
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MLGRIFLLKSRGSRKSERRKPQRREKSQKFLQDPGELTHLATTYLLKLNLGYQMLFLTKRVKF
Nucleotide Sequence ATGTTGGGAAGGATATTCCTCCTAAAGTCGAGAGGAAGCAGAAAATCAGAGCGACGAAAACCTCAGAGAAGAGAGAAGAGCCAGAAGTTTCTCCAAGACCCTGGTGAACTCACACACCTGGCCACCACTTACTTGCTGAAATTAAATTTGGGATACCAGATGTTGTTCTTAACCAAAAGAGTGAAGTTT
CircID chr12:121228556|121228866
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MIFCFLSTLGGISFPTSPLLTSSRAFMMLKQIPSAPYSVLAK
Nucleotide Sequence CTGATTTTCTGCTTCCTCTCGACTTTAGGAGGAATATCCTTCCCAACATCACCACTACTTACCTCAAGTCGTGCATTTATGATGCTAAAACAGATCCCTTCTGCCCCATATTCCGTCTTGGCAAAATAG
CircID chr12:121228556|121228866
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MLPLDFRRNILPNITTTYLKSCIYDAKTDPFCPIFRLGKIVENAGHSFQDMAVE
Nucleotide Sequence CTGCTTCCTCTCGACTTTAGGAGGAATATCCTTCCCAACATCACCACTACTTACCTCAAGTCGTGCATTTATGATGCTAAAACAGATCCCTTCTGCCCCATATTCCGTCTTGGCAAAATAGTGGAGAACGCAGGACACAGTTTCCAGGACATGGCCGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab