CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122146261|122146492
Strand -
CircType exon
Host Gene ENSG00000175727.12;
Algorism CIRI2;
Sequence AGCAAGGTGGGAGGTTGAAGAGCTTTGAGGCTCAGCAGCATGTTTGTGGCATTCGGTGGACACCATGGCCTTGGGCGGCTGGACAGGTTTTTGTGATGTGAGGGACACGCATGGGGCACATGGTAAGCTTGGCAAGGGCTCCAGGAACGCTGACGAAGGGTTTTAGGACCCCCACCCCCATGCCTGTACCAGGGCTGGCCTCCAGAGCGGGTGAGGACAGAGCAGCTGTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122146261|122146492 hsa-miR-198 0 0 1
chr12:122146261|122146492 hsa-miR-608 0 1 1
chr12:122146261|122146492 hsa-miR-649 0 1 1
chr12:122146261|122146492 hsa-miR-650 0 0 1
chr12:122146261|122146492 hsa-miR-532-3p 1 0 1
chr12:122146261|122146492 hsa-miR-615-5p 0 0 1
chr12:122146261|122146492 hsa-miR-330-3p 0 0 1
chr12:122146261|122146492 hsa-miR-1224-3p 0 0 1
chr12:122146261|122146492 hsa-miR-455-5p 0 0 1
chr12:122146261|122146492 hsa-miR-548d-3p 0 0 1
chr12:122146261|122146492 hsa-miR-1260 0 0 1
chr12:122146261|122146492 hsa-miR-1280 0 0 1
chr12:122146261|122146492 hsa-miR-1233 0 0 1
chr12:122146261|122146492 hsa-miR-516b 0 0 1
chr12:122146261|122146492 hsa-miR-129-3p 0 0 1
chr12:122146261|122146492 hsa-miR-499-3p 0 0 1
chr12:122146261|122146492 hsa-miR-572 1 0 0
chr12:122146261|122146492 hsa-miR-637 1 0 0
chr12:122146261|122146492 hsa-miR-1260a 0 1 0
chr12:122146261|122146492 hsa-miR-4254 0 1 0
chr12:122146261|122146492 hsa-miR-1268b 0 1 0
chr12:122146261|122146492 hsa-miR-3972 0 1 0
chr12:122146261|122146492 hsa-miR-4641 1 0 0
chr12:122146261|122146492 hsa-miR-4663 0 1 0
chr12:122146261|122146492 hsa-miR-12121 1 1 0
chr12:122146261|122146492 hsa-miR-12125 0 1 0
chr12:122146261|122146492 hsa-miR-150-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6749-3p 1 0 0
chr12:122146261|122146492 hsa-miR-93-3p 1 1 0
chr12:122146261|122146492 hsa-miR-15a-3p 0 1 0
chr12:122146261|122146492 hsa-miR-3194-3p 1 0 0
chr12:122146261|122146492 hsa-miR-6879-3p 1 0 0
chr12:122146261|122146492 hsa-miR-6720-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6089 1 0 0
chr12:122146261|122146492 hsa-miR-3622b-5p 0 1 0
chr12:122146261|122146492 hsa-miR-3189-5p 1 1 0
chr12:122146261|122146492 hsa-miR-1915-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6796-3p 0 1 0
chr12:122146261|122146492 hsa-miR-4697-3p 1 1 0
chr12:122146261|122146492 hsa-miR-6821-5p 1 0 0
chr12:122146261|122146492 hsa-miR-6774-3p 1 1 0
chr12:122146261|122146492 hsa-miR-1343-3p 1 0 0
chr12:122146261|122146492 hsa-miR-4786-3p 1 0 0
chr12:122146261|122146492 hsa-miR-516b-5p 0 1 0
chr12:122146261|122146492 hsa-miR-3922-5p 0 1 0
chr12:122146261|122146492 hsa-miR-4758-3p 1 0 0
chr12:122146261|122146492 hsa-miR-2355-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6814-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6895-3p 1 0 0
chr12:122146261|122146492 hsa-miR-6746-3p 0 1 0
chr12:122146261|122146492 hsa-miR-2114-3p 0 1 0
chr12:122146261|122146492 hsa-miR-518c-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6748-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6515-3p 0 1 0
chr12:122146261|122146492 hsa-miR-676-5p 0 1 0
chr12:122146261|122146492 hsa-miR-552-5p 0 1 0
chr12:122146261|122146492 hsa-miR-3664-5p 1 1 0
chr12:122146261|122146492 hsa-miR-6752-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6803-5p 1 1 0
chr12:122146261|122146492 hsa-miR-7110-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6751-5p 0 1 0
chr12:122146261|122146492 hsa-miR-7151-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6791-5p 1 0 0
chr12:122146261|122146492 hsa-miR-6862-3p 1 1 0
chr12:122146261|122146492 hsa-miR-6805-3p 1 1 0
chr12:122146261|122146492 hsa-miR-3928-5p 0 1 0
chr12:122146261|122146492 hsa-miR-6512-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6751-3p 0 1 0
chr12:122146261|122146492 hsa-miR-6500-5p 1 0 0
chr12:122146261|122146492 hsa-miR-6814-3p 1 0 0
chr12:122146261|122146492 hsa-miR-412-3p 1 0 0
chr12:122146261|122146492 hsa-miR-499a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:122146261|122146492
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MWHSVDTMALGGWTGFCDVRDTHGAHGKLGKGSRNADEGF
Nucleotide Sequence TTGTGGCATTCGGTGGACACCATGGCCTTGGGCGGCTGGACAGGTTTTTGTGATGTGAGGGACACGCATGGGGCACATGGTAAGCTTGGCAAGGGCTCCAGGAACGCTGACGAAGGGTTTTAG
CircID chr12:122146261|122146492
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MKSFEAQQHVCGIRWTPWPWAAGQVFVM
Nucleotide Sequence TTGAAGAGCTTTGAGGCTCAGCAGCATGTTTGTGGCATTCGGTGGACACCATGGCCTTGGGCGGCTGGACAGGTTTTTGTGATGTGA
CircID chr12:122146261|122146492
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGHMVSLARAPGTLTKGFRTPTPMPVPGLASRAGEDRAAV
Nucleotide Sequence ATGGGGCACATGGTAAGCTTGGCAAGGGCTCCAGGAACGCTGACGAAGGGTTTTAGGACCCCCACCCCCATGCCTGTACCAGGGCTGGCCTCCAGAGCGGGTGAGGACAGAGCAGCTGTG
CircID chr12:122146261|122146492
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MSSPALEASPGTGMGVGVLKPFVSVPGALAKLTMCPMRVPHITKTCPAAQGHGVHRMPQTCC
Nucleotide Sequence CTGTCCTCACCCGCTCTGGAGGCCAGCCCTGGTACAGGCATGGGGGTGGGGGTCCTAAAACCCTTCGTCAGCGTTCCTGGAGCCCTTGCCAAGCTTACCATGTGCCCCATGCGTGTCCCTCACATCACAAAAACCTGTCCAGCCGCCCAAGGCCATGGTGTCCACCGAATGCCACAAACATGCTGCTGA
CircID chr12:122146261|122146492
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MEPLPSLPCAPCVSLTSQKPVQPPKAMVSTECHKHAAEPQSSSTSHLA
Nucleotide Sequence CTGGAGCCCTTGCCAAGCTTACCATGTGCCCCATGCGTGTCCCTCACATCACAAAAACCTGTCCAGCCGCCCAAGGCCATGGTGTCCACCGAATGCCACAAACATGCTGCTGAGCCTCAAAGCTCTTCAACCTCCCACCTTGCT
CircID chr12:122146261|122146492
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MSSRPRPWCPPNATNMLLSLKALQPPTL
Nucleotide Sequence CTGTCCAGCCGCCCAAGGCCATGGTGTCCACCGAATGCCACAAACATGCTGCTGAGCCTCAAAGCTCTTCAACCTCCCACCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab