CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122856028|122856163
Strand +
CircType exon
Host Gene ENSG00000130787.12;
Algorism CIRI2;
Sequence TCTCAGCCTCCTCACGCAGGCCCTGGCTCCGCTCGCCCTCCAGCTGGGCAGCCCTCAGCTGGGCCAGCTCGTGGCGGAGCTGCTCATTATCCACCAGGGCCTTCTGCTTCTGCTTCCGCTGCTCCTCCAGCTCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122856028|122856163 hsa-miR-503-5p 0 0 1
chr12:122856028|122856163 hsa-miR-503-3p 0 0 1
chr12:122856028|122856163 hsa-miR-558 0 0 1
chr12:122856028|122856163 hsa-miR-646 0 1 1
chr12:122856028|122856163 hsa-miR-765 1 1 1
chr12:122856028|122856163 hsa-miR-298 1 1 1
chr12:122856028|122856163 hsa-miR-1291 0 1 1
chr12:122856028|122856163 hsa-miR-1261 0 0 1
chr12:122856028|122856163 hsa-miR-485-5p 0 0 1
chr12:122856028|122856163 hsa-miR-1207-3p 0 0 1
chr12:122856028|122856163 hsa-miR-571 0 1 0
chr12:122856028|122856163 hsa-miR-637 1 1 0
chr12:122856028|122856163 hsa-miR-663a 1 0 0
chr12:122856028|122856163 hsa-miR-658 1 0 0
chr12:122856028|122856163 hsa-miR-762 1 0 0
chr12:122856028|122856163 hsa-miR-920 1 0 0
chr12:122856028|122856163 hsa-miR-1255a 1 0 0
chr12:122856028|122856163 hsa-miR-2861 1 0 0
chr12:122856028|122856163 hsa-miR-3141 0 1 0
chr12:122856028|122856163 hsa-miR-3165 0 1 0
chr12:122856028|122856163 hsa-miR-3193 0 1 0
chr12:122856028|122856163 hsa-miR-3197 1 0 0
chr12:122856028|122856163 hsa-miR-3918 0 1 0
chr12:122856028|122856163 hsa-miR-4430 1 1 0
chr12:122856028|122856163 hsa-miR-3135b 1 1 0
chr12:122856028|122856163 hsa-miR-4487 0 1 0
chr12:122856028|122856163 hsa-miR-3960 1 0 0
chr12:122856028|122856163 hsa-miR-4656 1 0 0
chr12:122856028|122856163 hsa-miR-4660 0 1 0
chr12:122856028|122856163 hsa-miR-4688 1 0 0
chr12:122856028|122856163 hsa-miR-4721 0 1 0
chr12:122856028|122856163 hsa-miR-4734 1 0 0
chr12:122856028|122856163 hsa-miR-4739 0 1 0
chr12:122856028|122856163 hsa-miR-4741 1 0 0
chr12:122856028|122856163 hsa-miR-4767 1 0 0
chr12:122856028|122856163 hsa-miR-5698 1 0 0
chr12:122856028|122856163 hsa-miR-6081 1 1 0
chr12:122856028|122856163 hsa-miR-6084 0 1 0
chr12:122856028|122856163 hsa-miR-6085 1 0 0
chr12:122856028|122856163 hsa-miR-671-5p 1 0 0
chr12:122856028|122856163 hsa-miR-7106-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6894-5p 1 0 0
chr12:122856028|122856163 hsa-miR-766-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6515-5p 0 1 0
chr12:122856028|122856163 hsa-miR-4695-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6746-5p 1 0 0
chr12:122856028|122856163 hsa-miR-4722-5p 1 0 0
chr12:122856028|122856163 hsa-miR-505-5p 0 1 0
chr12:122856028|122856163 hsa-miR-7160-5p 0 1 0
chr12:122856028|122856163 hsa-miR-7845-5p 1 0 0
chr12:122856028|122856163 hsa-miR-3180-3p 1 0 0
chr12:122856028|122856163 hsa-miR-6829-5p 0 1 0
chr12:122856028|122856163 hsa-miR-3190-3p 1 0 0
chr12:122856028|122856163 hsa-miR-6827-5p 1 0 0
chr12:122856028|122856163 hsa-miR-3126-5p 1 0 0
chr12:122856028|122856163 hsa-miR-2467-3p 1 1 0
chr12:122856028|122856163 hsa-miR-5006-5p 1 0 0
chr12:122856028|122856163 hsa-miR-1226-5p 1 1 0
chr12:122856028|122856163 hsa-miR-3944-3p 1 0 0
chr12:122856028|122856163 hsa-miR-6784-5p 1 0 0
chr12:122856028|122856163 hsa-miR-4640-5p 1 0 0
chr12:122856028|122856163 hsa-miR-885-3p 1 0 0
chr12:122856028|122856163 hsa-miR-6749-5p 1 0 0
chr12:122856028|122856163 hsa-miR-937-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6828-5p 1 1 0
chr12:122856028|122856163 hsa-miR-423-5p 1 0 0
chr12:122856028|122856163 hsa-miR-7846-3p 0 1 0
chr12:122856028|122856163 hsa-miR-744-5p 1 1 0
chr12:122856028|122856163 hsa-miR-4763-3p 1 0 0
chr12:122856028|122856163 hsa-miR-6778-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6870-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6775-5p 1 0 0
chr12:122856028|122856163 hsa-miR-1343-5p 1 0 0
chr12:122856028|122856163 hsa-miR-5001-5p 1 1 0
chr12:122856028|122856163 hsa-miR-6726-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6743-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6769a-5p 0 1 0
chr12:122856028|122856163 hsa-miR-1249-5p 1 0 0
chr12:122856028|122856163 hsa-miR-7111-5p 1 0 0
chr12:122856028|122856163 hsa-miR-4728-5p 1 0 0
chr12:122856028|122856163 hsa-miR-10396b-5p 1 0 0
chr12:122856028|122856163 hsa-miR-328-5p 1 1 0
chr12:122856028|122856163 hsa-miR-4632-5p 1 0 0
chr12:122856028|122856163 hsa-miR-4649-5p 0 1 0
chr12:122856028|122856163 hsa-miR-4685-5p 1 1 0
chr12:122856028|122856163 hsa-miR-6729-5p 1 1 0
chr12:122856028|122856163 hsa-miR-6846-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6858-5p 0 1 0
chr12:122856028|122856163 hsa-miR-4723-5p 1 0 0
chr12:122856028|122856163 hsa-miR-939-5p 1 0 0
chr12:122856028|122856163 hsa-miR-1910-3p 1 1 0
chr12:122856028|122856163 hsa-miR-6511a-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6731-5p 1 0 0
chr12:122856028|122856163 hsa-miR-4665-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6762-5p 1 0 0
chr12:122856028|122856163 hsa-miR-6837-5p 0 1 0
chr12:122856028|122856163 hsa-miR-6884-5p 0 1 0
chr12:122856028|122856163 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:122856028|122856163
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MAPLALQLGSPQLGQLVAELLIIHQGLLLLLPLLLQLT
Nucleotide Sequence CTGGCTCCGCTCGCCCTCCAGCTGGGCAGCCCTCAGCTGGGCCAGCTCGTGGCGGAGCTGCTCATTATCCACCAGGGCCTTCTGCTTCTGCTTCCGCTGCTCCTCCAGCTCACC
CircID chr12:122856028|122856163
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MEEQRKQKQKALVDNEQLRHELAQLRAAQLEGERSQGLREEAE
Nucleotide Sequence CTGGAGGAGCAGCGGAAGCAGAAGCAGAAGGCCCTGGTGGATAATGAGCAGCTCCGCCACGAGCTGGCCCAGCTGAGGGCTGCCCAGCTGGAGGGCGAGCGGAGCCAGGGCCTGCGTGAGGAGGCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab