CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122860470|122860724
Strand -
CircType exon
Host Gene ENSG00000130787.12;
Algorism CIRI2;
Sequence CGAAGGCCTCATCTCGGCCTCCAAGGCTGTGGGCTGGGGAGCCACACAGCTGGTGTAGGTTGCCCTGGGTGGGGGGGGGCAGGGGGCTGCTTCCTGCCAGTTGGAGCAGTTTGGGGTTCAACAGGGTGCAGGGAGTAGAGGGGGTGTGGAGTGGTGCCAGCCGTCCGTGGGGTCAGAGACCCTGGCCCTGACTGGCCCTTGACCCGCAGGGAGGCAGCTGACAAGGTGGTGCTTCACACGGGCAAGTATGAGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122860470|122860724 hsa-miR-22-5p 0 0 1
chr12:122860470|122860724 hsa-miR-22-3p 0 0 1
chr12:122860470|122860724 hsa-miR-29a-5p 0 0 1
chr12:122860470|122860724 hsa-miR-29a-3p 0 0 1
chr12:122860470|122860724 hsa-miR-10a-5p 0 0 1
chr12:122860470|122860724 hsa-miR-10a-3p 0 0 1
chr12:122860470|122860724 hsa-miR-10b-5p 0 0 1
chr12:122860470|122860724 hsa-miR-10b-3p 0 0 1
chr12:122860470|122860724 hsa-miR-143-5p 0 0 1
chr12:122860470|122860724 hsa-miR-143-3p 0 0 1
chr12:122860470|122860724 hsa-miR-29c-5p 0 0 1
chr12:122860470|122860724 hsa-miR-29c-3p 0 0 1
chr12:122860470|122860724 hsa-miR-432-5p 0 0 1
chr12:122860470|122860724 hsa-miR-432-3p 0 0 1
chr12:122860470|122860724 hsa-miR-593-5p 0 0 1
chr12:122860470|122860724 hsa-miR-593-3p 0 0 1
chr12:122860470|122860724 hsa-miR-650 0 0 1
chr12:122860470|122860724 hsa-miR-653-5p 0 0 1
chr12:122860470|122860724 hsa-miR-653-3p 0 0 1
chr12:122860470|122860724 hsa-miR-1182 0 0 1
chr12:122860470|122860724 hsa-miR-1226-5p 0 0 1
chr12:122860470|122860724 hsa-miR-1226-3p 0 0 1
chr12:122860470|122860724 hsa-miR-1267 0 0 1
chr12:122860470|122860724 hsa-miR-1207-3p 0 0 1
chr12:122860470|122860724 hsa-miR-1207-5p 0 0 1
chr12:122860470|122860724 hsa-miR-324-3p 0 0 1
chr12:122860470|122860724 hsa-miR-220b 0 0 1
chr12:122860470|122860724 hsa-miR-1274b 0 0 1
chr12:122860470|122860724 hsa-miR-644 0 0 1
chr12:122860470|122860724 hsa-miR-768-5p 0 0 1
chr12:122860470|122860724 hsa-miR-886-3p 0 0 1
chr12:122860470|122860724 hsa-miR-147 0 0 1
chr12:122860470|122860724 hsa-miR-29b 0 0 1
chr12:122860470|122860724 hsa-miR-661 1 0 0
chr12:122860470|122860724 hsa-miR-1470 1 0 0
chr12:122860470|122860724 hsa-miR-1913 1 0 0
chr12:122860470|122860724 hsa-miR-1976 1 0 0
chr12:122860470|122860724 hsa-miR-4313 1 0 0
chr12:122860470|122860724 hsa-miR-4734 1 0 0
chr12:122860470|122860724 hsa-miR-5193 1 0 0
chr12:122860470|122860724 hsa-miR-6749-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6747-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6836-3p 1 0 0
chr12:122860470|122860724 hsa-miR-149-5p 1 0 0
chr12:122860470|122860724 hsa-miR-210-5p 1 0 0
chr12:122860470|122860724 hsa-miR-1225-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6875-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6842-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6841-3p 1 0 0
chr12:122860470|122860724 hsa-miR-1915-5p 1 0 0
chr12:122860470|122860724 hsa-miR-6845-3p 1 0 0
chr12:122860470|122860724 hsa-miR-877-3p 1 0 0
chr12:122860470|122860724 hsa-miR-185-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6735-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6882-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6788-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6763-3p 1 0 0
chr12:122860470|122860724 hsa-miR-1247-5p 1 0 0
chr12:122860470|122860724 hsa-miR-4707-3p 1 0 0
chr12:122860470|122860724 hsa-miR-1908-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6894-3p 1 0 0
chr12:122860470|122860724 hsa-miR-4640-5p 1 0 0
chr12:122860470|122860724 hsa-miR-6803-3p 1 0 0
chr12:122860470|122860724 hsa-miR-7113-3p 1 0 0
chr12:122860470|122860724 hsa-miR-4640-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6769a-3p 1 0 0
chr12:122860470|122860724 hsa-miR-339-5p 1 0 0
chr12:122860470|122860724 hsa-miR-6811-3p 1 0 0
chr12:122860470|122860724 hsa-miR-7106-3p 1 0 0
chr12:122860470|122860724 hsa-miR-4687-5p 1 0 0
chr12:122860470|122860724 hsa-miR-6871-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6752-3p 1 0 0
chr12:122860470|122860724 hsa-miR-5088-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6760-3p 1 0 0
chr12:122860470|122860724 hsa-miR-3620-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6779-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6846-3p 1 0 0
chr12:122860470|122860724 hsa-miR-3162-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6731-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6743-5p 1 0 0
chr12:122860470|122860724 hsa-miR-3127-3p 1 0 0
chr12:122860470|122860724 hsa-miR-4726-5p 1 0 0
chr12:122860470|122860724 hsa-miR-6893-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6756-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6862-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6801-3p 1 0 0
chr12:122860470|122860724 hsa-miR-6810-3p 1 0 0
chr12:122860470|122860724 hsa-miR-4723-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:122860470|122860724
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MGSHTAGVGCPGWGGAGGCFLPVGAVWGSTGCRE
Nucleotide Sequence CTGGGGAGCCACACAGCTGGTGTAGGTTGCCCTGGGTGGGGGGGGGCAGGGGGCTGCTTCCTGCCAGTTGGAGCAGTTTGGGGTTCAACAGGGTGCAGGGAGTAG
CircID chr12:122860470|122860724
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MGGGGQGAASCQLEQFGVQQGAGSRGGVEWCQPSVGSETLALTGP
Nucleotide Sequence CTGGGTGGGGGGGGGCAGGGGGCTGCTTCCTGCCAGTTGGAGCAGTTTGGGGTTCAACAGGGTGCAGGGAGTAGAGGGGGTGTGGAGTGGTGCCAGCCGTCCGTGGGGTCAGAGACCCTGGCCCTGACTGGCCCTTGA
CircID chr12:122860470|122860724
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MWAGEPHSWCRLPWVGGGRGLLPASWSSLGFNRVQGVEGVWSGASRPWGQRPWP
Nucleotide Sequence CTGTGGGCTGGGGAGCCACACAGCTGGTGTAGGTTGCCCTGGGTGGGGGGGGGCAGGGGGCTGCTTCCTGCCAGTTGGAGCAGTTTGGGGTTCAACAGGGTGCAGGGAGTAGAGGGGGTGTGGAGTGGTGCCAGCCGTCCGTGGGGTCAGAGACCCTGGCCCTGA
CircID chr12:122860470|122860724
ORF Type ORF4
Protein Length 71
Nucleotide Length 216
Protein Sequence MSAASLRVKGQSGPGSLTPRTAGTTPHPLYSLHPVEPQTAPTGRKQPPAPPHPGQPTPAVWLPSPQPWRPR
Nucleotide Sequence TTGTCAGCTGCCTCCCTGCGGGTCAAGGGCCAGTCAGGGCCAGGGTCTCTGACCCCACGGACGGCTGGCACCACTCCACACCCCCTCTACTCCCTGCACCCTGTTGAACCCCAAACTGCTCCAACTGGCAGGAAGCAGCCCCCTGCCCCCCCCCACCCAGGGCAACCTACACCAGCTGTGTGGCTCCCCAGCCCACAGCCTTGGAGGCCGAGATGA
CircID chr12:122860470|122860724
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MAPLHTPSTPCTLLNPKLLQLAGSSPLPPPTQGNLHQLCGSPAHSLGGRDEAF
Nucleotide Sequence CTGGCACCACTCCACACCCCCTCTACTCCCTGCACCCTGTTGAACCCCAAACTGCTCCAACTGGCAGGAAGCAGCCCCCTGCCCCCCCCCACCCAGGGCAACCTACACCAGCTGTGTGGCTCCCCAGCCCACAGCCTTGGAGGCCGAGATGAGGCCTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab