CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122981738|122982109
Strand -
CircType exon
Host Gene ENSG00000256028.2;
Algorism CIRI2;
Sequence AAGAGGAGGAAGAAGAAGAAGAAGAGGAAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCAGGTGGAGGCTCTGCCGGGCCCCTCGCTGGACCAGTGGCACCGATCAGCTGGGGAGGAAGAGGATGGCCCAGGTACTGTGCTGCCCAGCACCTGAGAGGGAGAAGGTCGCTTCCCAAGGCCTGGCCACCACCTCCGTCTTCCCTTCCAGTCCTGACGGATGAGCAGAAGTCCCGAATCCAGGCCATGAAGCCCATGACCAAGGAGGAGTGGGATGCCCGGCAGAGCATCATCCGCAAGGTGGTGGACCCTGAGACGGGGCGCACCAGGTGGGGAGCTTTCGGCCTGACTTACACCACAGGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122981738|122982109 hsa-miR-224-5p 0 0 1
chr12:122981738|122982109 hsa-miR-224-3p 0 0 1
chr12:122981738|122982109 hsa-miR-370-5p 0 0 1
chr12:122981738|122982109 hsa-miR-370-3p 0 0 1
chr12:122981738|122982109 hsa-miR-612 1 1 1
chr12:122981738|122982109 hsa-miR-619-5p 0 0 1
chr12:122981738|122982109 hsa-miR-619-3p 0 0 1
chr12:122981738|122982109 hsa-miR-636 0 0 1
chr12:122981738|122982109 hsa-miR-675-5p 0 0 1
chr12:122981738|122982109 hsa-miR-675-3p 0 0 1
chr12:122981738|122982109 hsa-miR-874-5p 0 0 1
chr12:122981738|122982109 hsa-miR-874-3p 0 0 1
chr12:122981738|122982109 hsa-miR-938 0 0 1
chr12:122981738|122982109 hsa-miR-1227-5p 0 0 1
chr12:122981738|122982109 hsa-miR-1227-3p 0 0 1
chr12:122981738|122982109 hsa-miR-1236-5p 0 0 1
chr12:122981738|122982109 hsa-miR-1236-3p 0 0 1
chr12:122981738|122982109 hsa-miR-1248 0 0 1
chr12:122981738|122982109 hsa-miR-1250-5p 0 0 1
chr12:122981738|122982109 hsa-miR-1250-3p 0 0 1
chr12:122981738|122982109 hsa-miR-1266-5p 0 0 1
chr12:122981738|122982109 hsa-miR-1266-3p 0 0 1
chr12:122981738|122982109 hsa-miR-1322 0 1 1
chr12:122981738|122982109 hsa-miR-125a-3p 0 0 1
chr12:122981738|122982109 hsa-miR-324-5p 0 0 1
chr12:122981738|122982109 hsa-miR-423-5p 0 0 1
chr12:122981738|122982109 hsa-miR-1224-3p 0 0 1
chr12:122981738|122982109 hsa-miR-502-5p 0 0 1
chr12:122981738|122982109 hsa-miR-767-3p 0 1 1
chr12:122981738|122982109 hsa-miR-483-3p 0 0 1
chr12:122981738|122982109 hsa-miR-516a-3p 0 0 1
chr12:122981738|122982109 hsa-miR-220b 0 0 1
chr12:122981738|122982109 hsa-miR-642 0 0 1
chr12:122981738|122982109 hsa-miR-7 0 0 1
chr12:122981738|122982109 hsa-miR-1308 0 0 1
chr12:122981738|122982109 hsa-miR-1285 0 0 1
chr12:122981738|122982109 hsa-miR-218 0 0 1
chr12:122981738|122982109 hsa-miR-1254 0 0 1
chr12:122981738|122982109 hsa-miR-101 0 0 1
chr12:122981738|122982109 hsa-miR-107 0 1 0
chr12:122981738|122982109 hsa-miR-326 1 0 0
chr12:122981738|122982109 hsa-miR-661 1 0 0
chr12:122981738|122982109 hsa-miR-762 1 0 0
chr12:122981738|122982109 hsa-miR-1202 1 0 0
chr12:122981738|122982109 hsa-miR-1976 1 0 0
chr12:122981738|122982109 hsa-miR-3142 0 1 0
chr12:122981738|122982109 hsa-miR-4252 0 1 0
chr12:122981738|122982109 hsa-miR-3665 1 0 0
chr12:122981738|122982109 hsa-miR-4440 1 1 0
chr12:122981738|122982109 hsa-miR-4448 1 0 0
chr12:122981738|122982109 hsa-miR-4469 0 1 0
chr12:122981738|122982109 hsa-miR-4518 0 1 0
chr12:122981738|122982109 hsa-miR-1587 1 0 0
chr12:122981738|122982109 hsa-miR-4686 0 1 0
chr12:122981738|122982109 hsa-miR-4739 0 1 0
chr12:122981738|122982109 hsa-miR-378j 0 1 0
chr12:122981738|122982109 hsa-miR-6860 0 1 0
chr12:122981738|122982109 hsa-miR-7515 0 1 0
chr12:122981738|122982109 hsa-miR-9500 0 1 0
chr12:122981738|122982109 hsa-miR-12116 1 0 0
chr12:122981738|122982109 hsa-miR-12126 0 1 0
chr12:122981738|122982109 hsa-miR-4433b-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6749-3p 1 1 0
chr12:122981738|122982109 hsa-miR-93-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3194-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6747-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4433a-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6836-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6881-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6089 1 0 0
chr12:122981738|122982109 hsa-miR-4755-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6875-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6762-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3189-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6873-3p 1 0 0
chr12:122981738|122982109 hsa-miR-1915-5p 0 1 0
chr12:122981738|122982109 hsa-miR-3663-5p 0 1 0
chr12:122981738|122982109 hsa-miR-659-3p 0 1 0
chr12:122981738|122982109 hsa-miR-877-3p 1 1 0
chr12:122981738|122982109 hsa-miR-486-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6782-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6765-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6735-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4436b-5p 1 0 0
chr12:122981738|122982109 hsa-miR-939-3p 1 1 0
chr12:122981738|122982109 hsa-miR-4640-5p 1 0 0
chr12:122981738|122982109 hsa-miR-5001-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3127-5p 1 0 0
chr12:122981738|122982109 hsa-miR-7113-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3677-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3202 0 1 0
chr12:122981738|122982109 hsa-miR-6809-3p 1 1 0
chr12:122981738|122982109 hsa-miR-7111-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6780a-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4787-5p 0 1 0
chr12:122981738|122982109 hsa-miR-103a-3p 0 1 0
chr12:122981738|122982109 hsa-miR-5196-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6742-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4707-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6813-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3158-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4778-3p 0 1 0
chr12:122981738|122982109 hsa-miR-1238-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6508-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6886-3p 1 1 0
chr12:122981738|122982109 hsa-miR-5088-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6738-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6880-3p 1 1 0
chr12:122981738|122982109 hsa-miR-1249-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6775-5p 1 0 0
chr12:122981738|122982109 hsa-miR-1343-5p 1 0 0
chr12:122981738|122982109 hsa-miR-5001-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6851-5p 0 1 0
chr12:122981738|122982109 hsa-miR-7107-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6763-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6780a-5p 0 1 0
chr12:122981738|122982109 hsa-miR-320a-5p 1 1 0
chr12:122981738|122982109 hsa-miR-6754-3p 1 0 0
chr12:122981738|122982109 hsa-miR-3620-5p 1 0 0
chr12:122981738|122982109 hsa-miR-4685-5p 1 0 0
chr12:122981738|122982109 hsa-miR-4745-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6848-5p 1 0 0
chr12:122981738|122982109 hsa-miR-3187-5p 0 1 0
chr12:122981738|122982109 hsa-miR-365a-5p 1 1 0
chr12:122981738|122982109 hsa-miR-3085-5p 1 1 0
chr12:122981738|122982109 hsa-miR-1285-3p 0 1 0
chr12:122981738|122982109 hsa-miR-5008-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6791-3p 1 1 0
chr12:122981738|122982109 hsa-miR-3184-5p 0 1 0
chr12:122981738|122982109 hsa-miR-2682-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6762-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6893-3p 1 1 0
chr12:122981738|122982109 hsa-miR-6756-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6805-3p 1 1 0
chr12:122981738|122982109 hsa-miR-3059-5p 0 1 0
chr12:122981738|122982109 hsa-miR-6823-3p 0 1 0
chr12:122981738|122982109 hsa-miR-6891-3p 1 0 0
chr12:122981738|122982109 hsa-miR-4756-5p 1 0 0
chr12:122981738|122982109 hsa-miR-6783-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6833-3p 1 0 0
chr12:122981738|122982109 hsa-miR-6737-3p 0 1 0
chr12:122981738|122982109 hsa-miR-340-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:122981738|122982109
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPGTVLPST
Nucleotide Sequence CTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCAGGTGGAGGCTCTGCCGGGCCCCTCGCTGGACCAGTGGCACCGATCAGCTGGGGAGGAAGAGGATGGCCCAGGTACTGTGCTGCCCAGCACCTGA
CircID chr12:122981738|122982109
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MGRKRMAQVLCCPAPEREKVASQGLATTSVFPSSPDG
Nucleotide Sequence CTGGGGAGGAAGAGGATGGCCCAGGTACTGTGCTGCCCAGCACCTGAGAGGGAGAAGGTCGCTTCCCAAGGCCTGGCCACCACCTCCGTCTTCCCTTCCAGTCCTGACGGATGA
CircID chr12:122981738|122982109
ORF Type ORF3
Protein Length 70
Nucleotide Length 210
Protein Sequence MRGRRSLPKAWPPPPSSLPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRWGAFGLTYTTG
Nucleotide Sequence CTGAGAGGGAGAAGGTCGCTTCCCAAGGCCTGGCCACCACCTCCGTCTTCCCTTCCAGTCCTGACGGATGAGCAGAAGTCCCGAATCCAGGCCATGAAGCCCATGACCAAGGAGGAGTGGGATGCCCGGCAGAGCATCATCCGCAAGGTGGTGGACCCTGAGACGGGGCGCACCAGGTGGGGAGCTTTCGGCCTGACTTACACCACAGGA
CircID chr12:122981738|122982109
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MEGKTEVVARPWEATFSLSGAGQHSTWAILFLPS
Nucleotide Sequence CTGGAAGGGAAGACGGAGGTGGTGGCCAGGCCTTGGGAAGCGACCTTCTCCCTCTCAGGTGCTGGGCAGCACAGTACCTGGGCCATCCTCTTCCTCCCCAGCTGA
CircID chr12:122981738|122982109
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MVQRGARQSLHLLCFRLLLALLLQLLPLLLLLPPL
Nucleotide Sequence CTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCTTCTTCCTCCTCTT
CircID chr12:122981738|122982109
ORF Type ORF6
Protein Length 97
Nucleotide Length 291
Protein Sequence MPGIPLLLGHGLHGLDSGLLLIRQDWKGRRRWWPGLGKRPSPSQVLGSTVPGPSSSSPADRCHWSSEGPGRASTCCASAFSLPFFFSFFLFFFFFLL
Nucleotide Sequence CTGCCGGGCATCCCACTCCTCCTTGGTCATGGGCTTCATGGCCTGGATTCGGGACTTCTGCTCATCCGTCAGGACTGGAAGGGAAGACGGAGGTGGTGGCCAGGCCTTGGGAAGCGACCTTCTCCCTCTCAGGTGCTGGGCAGCACAGTACCTGGGCCATCCTCTTCCTCCCCAGCTGATCGGTGCCACTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCTTCTTCCTCCTC
CircID chr12:122981738|122982109
ORF Type ORF7
Protein Length 112
Nucleotide Length 336
Protein Sequence MVRPVSGSTTLRMMLCRASHSSLVMGFMAWIRDFCSSVRTGREDGGGGQALGSDLLPLRCWAAQYLGHPLPPQLIGATGPARGPAEPPPAVLPPSPCPSSSASSSSSSSSSS
Nucleotide Sequence CTGGTGCGCCCCGTCTCAGGGTCCACCACCTTGCGGATGATGCTCTGCCGGGCATCCCACTCCTCCTTGGTCATGGGCTTCATGGCCTGGATTCGGGACTTCTGCTCATCCGTCAGGACTGGAAGGGAAGACGGAGGTGGTGGCCAGGCCTTGGGAAGCGACCTTCTCCCTCTCAGGTGCTGGGCAGCACAGTACCTGGGCCATCCTCTTCCTCCCCAGCTGATCGGTGCCACTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCTTCTTCCTCCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab