CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122981750|122981879
Strand +
CircType exon
Host Gene ENSG00000256028.2;
Algorism CIRI2;
Sequence CTGGGCCATCCTCTTCCTCCCCAGCTGATCGGTGCCACTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122981750|122981879 hsa-miR-214-5p 0 0 1
chr12:122981750|122981879 hsa-miR-214-3p 0 0 1
chr12:122981750|122981879 hsa-miR-650 0 0 1
chr12:122981750|122981879 hsa-miR-760 0 0 1
chr12:122981750|122981879 hsa-miR-939-5p 0 0 1
chr12:122981750|122981879 hsa-miR-939-3p 0 0 1
chr12:122981750|122981879 hsa-miR-296-5p 0 0 1
chr12:122981750|122981879 hsa-miR-1207-3p 0 0 1
chr12:122981750|122981879 hsa-miR-720 0 0 1
chr12:122981750|122981879 hsa-miR-658 1 0 0
chr12:122981750|122981879 hsa-miR-762 1 0 0
chr12:122981750|122981879 hsa-miR-765 0 1 0
chr12:122981750|122981879 hsa-miR-298 1 0 0
chr12:122981750|122981879 hsa-miR-1268a 1 0 0
chr12:122981750|122981879 hsa-miR-3125 1 1 0
chr12:122981750|122981879 hsa-miR-3147 1 0 0
chr12:122981750|122981879 hsa-miR-3154 1 1 0
chr12:122981750|122981879 hsa-miR-3185 1 1 0
chr12:122981750|122981879 hsa-miR-3197 1 0 0
chr12:122981750|122981879 hsa-miR-4271 1 0 0
chr12:122981750|122981879 hsa-miR-3665 0 1 0
chr12:122981750|122981879 hsa-miR-3916 1 1 0
chr12:122981750|122981879 hsa-miR-1268b 1 0 0
chr12:122981750|122981879 hsa-miR-4428 1 1 0
chr12:122981750|122981879 hsa-miR-3135b 1 0 0
chr12:122981750|122981879 hsa-miR-4467 1 0 0
chr12:122981750|122981879 hsa-miR-4476 1 0 0
chr12:122981750|122981879 hsa-miR-4484 1 0 0
chr12:122981750|122981879 hsa-miR-4496 1 0 0
chr12:122981750|122981879 hsa-miR-4516 1 1 0
chr12:122981750|122981879 hsa-miR-4533 1 0 0
chr12:122981750|122981879 hsa-miR-3960 1 0 0
chr12:122981750|122981879 hsa-miR-4642 1 0 0
chr12:122981750|122981879 hsa-miR-4688 1 0 0
chr12:122981750|122981879 hsa-miR-4739 1 1 0
chr12:122981750|122981879 hsa-miR-4767 1 0 0
chr12:122981750|122981879 hsa-miR-5191 1 0 0
chr12:122981750|122981879 hsa-miR-5693 0 1 0
chr12:122981750|122981879 hsa-miR-5703 1 1 0
chr12:122981750|122981879 hsa-miR-5787 1 0 0
chr12:122981750|122981879 hsa-miR-6077 1 0 0
chr12:122981750|122981879 hsa-miR-6088 1 0 0
chr12:122981750|122981879 hsa-miR-6124 1 0 0
chr12:122981750|122981879 hsa-miR-6125 1 0 0
chr12:122981750|122981879 hsa-miR-6127 1 0 0
chr12:122981750|122981879 hsa-miR-6133 1 1 0
chr12:122981750|122981879 hsa-miR-6165 1 0 0
chr12:122981750|122981879 hsa-miR-7150 1 0 0
chr12:122981750|122981879 hsa-miR-7706 1 0 0
chr12:122981750|122981879 hsa-miR-8089 1 1 0
chr12:122981750|122981879 hsa-miR-12114 1 1 0
chr12:122981750|122981879 hsa-miR-12118 1 1 0
chr12:122981750|122981879 hsa-miR-4433b-3p 1 0 0
chr12:122981750|122981879 hsa-miR-3194-3p 0 1 0
chr12:122981750|122981879 hsa-miR-6809-5p 0 1 0
chr12:122981750|122981879 hsa-miR-1287-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6765-5p 1 0 0
chr12:122981750|122981879 hsa-miR-671-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6861-5p 1 0 0
chr12:122981750|122981879 hsa-miR-7106-5p 0 1 0
chr12:122981750|122981879 hsa-miR-6825-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6894-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6510-5p 1 1 0
chr12:122981750|122981879 hsa-miR-766-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6833-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6089 1 0 0
chr12:122981750|122981879 hsa-miR-6873-5p 1 0 0
chr12:122981750|122981879 hsa-miR-7847-3p 1 0 0
chr12:122981750|122981879 hsa-miR-4695-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6746-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4709-3p 1 1 0
chr12:122981750|122981879 hsa-miR-4722-5p 1 0 0
chr12:122981750|122981879 hsa-miR-593-5p 1 0 0
chr12:122981750|122981879 hsa-miR-3180-3p 1 0 0
chr12:122981750|122981879 hsa-miR-2467-5p 0 1 0
chr12:122981750|122981879 hsa-miR-6770-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6760-5p 1 1 0
chr12:122981750|122981879 hsa-miR-2467-3p 1 0 0
chr12:122981750|122981879 hsa-miR-7109-5p 1 0 0
chr12:122981750|122981879 hsa-miR-1226-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4640-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6771-5p 1 0 0
chr12:122981750|122981879 hsa-miR-877-5p 1 0 0
chr12:122981750|122981879 hsa-miR-149-3p 1 0 0
chr12:122981750|122981879 hsa-miR-6824-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6878-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6877-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4776-5p 0 1 0
chr12:122981750|122981879 hsa-miR-423-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4773 1 0 0
chr12:122981750|122981879 hsa-miR-891a-3p 0 1 0
chr12:122981750|122981879 hsa-miR-4749-3p 0 1 0
chr12:122981750|122981879 hsa-miR-10400-5p 1 0 0
chr12:122981750|122981879 hsa-miR-1207-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4763-3p 1 0 0
chr12:122981750|122981879 hsa-miR-6870-5p 1 0 0
chr12:122981750|122981879 hsa-miR-1343-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6743-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6756-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6803-5p 1 0 0
chr12:122981750|122981879 hsa-miR-1249-5p 0 1 0
chr12:122981750|122981879 hsa-miR-6751-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6788-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6797-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6808-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6879-5p 1 1 0
chr12:122981750|122981879 hsa-miR-7111-5p 1 1 0
chr12:122981750|122981879 hsa-miR-5196-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6780b-5p 1 0 0
chr12:122981750|122981879 hsa-miR-328-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4632-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4649-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4725-3p 1 0 0
chr12:122981750|122981879 hsa-miR-6729-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6735-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6858-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4436b-3p 1 1 0
chr12:122981750|122981879 hsa-miR-6831-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6511a-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6856-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4700-5p 0 1 0
chr12:122981750|122981879 hsa-miR-3173-3p 1 0 0
chr12:122981750|122981879 hsa-miR-4747-5p 1 0 0
chr12:122981750|122981879 hsa-miR-6891-5p 1 0 0
chr12:122981750|122981879 hsa-miR-4667-5p 1 1 0
chr12:122981750|122981879 hsa-miR-9851-3p 1 0 0
chr12:122981750|122981879 hsa-miR-6859-5p 1 1 0
chr12:122981750|122981879 hsa-miR-6884-5p 1 0 0
chr12:122981750|122981879 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:122981750|122981879
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence LGHPLPPQLIGATGPARGPAEPPPAVLPPSPCPSSSASSSSSS
Nucleotide Sequence CTGGGCCATCCTCTTCCTCCCCAGCTGATCGGTGCCACTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCT
CircID chr12:122981750|122981879
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MVQRGARQSLHLLCFRLLLALLLQLLPLLLL
Nucleotide Sequence CTGGTCCAGCGAGGGGCCCGGCAGAGCCTCCACCTGCTGTGCTTCCGCCTTCTCCTTGCCCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCTT
CircID chr12:122981750|122981879
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP
Nucleotide Sequence CTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCAGGTGGAGGCTCTGCCGGGCCCCTCGCTGGACCAGTGGCACCGATCAGCTGGGGAGGAAGAGGATGGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab