CircRNA Information

General Information
circRNA Basic Information
CircID chr12:122982469|122982729
Strand +
CircType exon
Host Gene ENSG00000256028.2;
Algorism CIRI2;
Sequence CTGCCCAGGCTGGGCCGCCAGCGTCGTCCACAGGCCTTGGCCAGCGGGGGCCCTCAGGGAAGCAACCCAGCTCGCATCTGGAAGGCCAGGCAGTCCCCTCGGGTGGCTTGCTGGGGAAGAAAGCACACAGGAGGAGGGGTACATCACAAACAGAGCTGGGGGCGGATGGCAGGCAGAGGGGCCACACCCACCTTGTTGATCTCTCTGTGTCGTTCTTTGGTTACGATTTCCTCTAGGACCTCGCCATCTCCCTTAATAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:122982469|122982729 hsa-miR-609 0 0 1
chr12:122982469|122982729 hsa-miR-612 0 0 1
chr12:122982469|122982729 hsa-miR-624-5p 0 0 1
chr12:122982469|122982729 hsa-miR-624-3p 0 0 1
chr12:122982469|122982729 hsa-miR-636 1 0 1
chr12:122982469|122982729 hsa-miR-661 0 0 1
chr12:122982469|122982729 hsa-miR-758-5p 0 0 1
chr12:122982469|122982729 hsa-miR-758-3p 0 0 1
chr12:122982469|122982729 hsa-miR-877-5p 0 0 1
chr12:122982469|122982729 hsa-miR-877-3p 0 0 1
chr12:122982469|122982729 hsa-miR-663b 0 1 1
chr12:122982469|122982729 hsa-miR-1288-5p 0 0 1
chr12:122982469|122982729 hsa-miR-1288-3p 0 0 1
chr12:122982469|122982729 hsa-miR-296-5p 0 1 1
chr12:122982469|122982729 hsa-miR-525-5p 0 0 1
chr12:122982469|122982729 hsa-miR-361-3p 0 1 1
chr12:122982469|122982729 hsa-miR-520a-5p 0 0 1
chr12:122982469|122982729 hsa-miR-125a-5p 0 0 1
chr12:122982469|122982729 hsa-miR-516a-3p 0 0 1
chr12:122982469|122982729 hsa-miR-1274a 0 0 1
chr12:122982469|122982729 hsa-miR-125b 0 0 1
chr12:122982469|122982729 hsa-miR-644 0 0 1
chr12:122982469|122982729 hsa-miR-1285 0 0 1
chr12:122982469|122982729 hsa-miR-218 0 0 1
chr12:122982469|122982729 hsa-miR-1254 0 0 1
chr12:122982469|122982729 hsa-miR-762 1 0 0
chr12:122982469|122982729 hsa-miR-1470 1 0 0
chr12:122982469|122982729 hsa-miR-1913 1 0 0
chr12:122982469|122982729 hsa-miR-2861 1 0 0
chr12:122982469|122982729 hsa-miR-3125 0 1 0
chr12:122982469|122982729 hsa-miR-4734 1 0 0
chr12:122982469|122982729 hsa-miR-6075 0 1 0
chr12:122982469|122982729 hsa-miR-6879-3p 1 0 0
chr12:122982469|122982729 hsa-miR-3692-5p 1 0 0
chr12:122982469|122982729 hsa-miR-6089 1 0 0
chr12:122982469|122982729 hsa-miR-6762-3p 1 0 0
chr12:122982469|122982729 hsa-miR-5589-5p 0 1 0
chr12:122982469|122982729 hsa-miR-6845-3p 1 0 0
chr12:122982469|122982729 hsa-miR-6798-5p 1 0 0
chr12:122982469|122982729 hsa-miR-6760-5p 0 1 0
chr12:122982469|122982729 hsa-miR-3150b-3p 1 0 0
chr12:122982469|122982729 hsa-miR-6735-3p 0 1 0
chr12:122982469|122982729 hsa-miR-6882-3p 0 1 0
chr12:122982469|122982729 hsa-miR-1226-5p 1 1 0
chr12:122982469|122982729 hsa-miR-4763-5p 1 1 0
chr12:122982469|122982729 hsa-miR-6894-3p 1 1 0
chr12:122982469|122982729 hsa-miR-4640-5p 1 0 0
chr12:122982469|122982729 hsa-miR-5001-3p 0 1 0
chr12:122982469|122982729 hsa-miR-6780a-3p 0 1 0
chr12:122982469|122982729 hsa-miR-4667-3p 1 1 0
chr12:122982469|122982729 hsa-miR-6824-5p 1 1 0
chr12:122982469|122982729 hsa-miR-6769a-3p 0 1 0
chr12:122982469|122982729 hsa-miR-7160-3p 0 1 0
chr12:122982469|122982729 hsa-miR-3922-5p 0 1 0
chr12:122982469|122982729 hsa-miR-1237-3p 0 1 0
chr12:122982469|122982729 hsa-miR-6811-3p 0 1 0
chr12:122982469|122982729 hsa-miR-660-3p 0 1 0
chr12:122982469|122982729 hsa-miR-4758-3p 1 0 0
chr12:122982469|122982729 hsa-miR-6887-3p 0 1 0
chr12:122982469|122982729 hsa-miR-3160-5p 0 1 0
chr12:122982469|122982729 hsa-miR-5088-3p 0 1 0
chr12:122982469|122982729 hsa-miR-6738-3p 1 1 0
chr12:122982469|122982729 hsa-miR-4749-3p 1 1 0
chr12:122982469|122982729 hsa-miR-328-3p 1 0 0
chr12:122982469|122982729 hsa-miR-6770-3p 0 1 0
chr12:122982469|122982729 hsa-miR-520g-5p 0 1 0
chr12:122982469|122982729 hsa-miR-7159-5p 0 1 0
chr12:122982469|122982729 hsa-miR-5002-3p 0 1 0
chr12:122982469|122982729 hsa-miR-6769b-5p 0 1 0
chr12:122982469|122982729 hsa-miR-6769a-5p 0 1 0
chr12:122982469|122982729 hsa-miR-7107-5p 0 1 0
chr12:122982469|122982729 hsa-miR-1915-3p 1 0 0
chr12:122982469|122982729 hsa-miR-4685-5p 1 0 0
chr12:122982469|122982729 hsa-miR-6729-5p 1 0 0
chr12:122982469|122982729 hsa-miR-6848-5p 1 0 0
chr12:122982469|122982729 hsa-miR-3199 0 1 0
chr12:122982469|122982729 hsa-miR-1271-3p 1 0 0
chr12:122982469|122982729 hsa-miR-4722-3p 1 1 0
chr12:122982469|122982729 hsa-miR-6727-3p 1 1 0
chr12:122982469|122982729 hsa-miR-6529-5p 0 1 0
chr12:122982469|122982729 hsa-miR-6805-3p 1 0 0
chr12:122982469|122982729 hsa-miR-6810-3p 1 0 0
chr12:122982469|122982729 hsa-miR-10400-3p 1 0 0
chr12:122982469|122982729 hsa-miR-3085-3p 1 0 0
chr12:122982469|122982729 hsa-miR-5581-5p 0 1 0
chr12:122982469|122982729 hsa-miR-6744-3p 1 1 0
chr12:122982469|122982729 hsa-miR-4769-3p 1 1 0
chr12:122982469|122982729 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:122982469|122982729
ORF Type ORF1
Protein Length 87
Nucleotide Length 261
Protein Sequence LPRLGRQRRPQALASGGPQGSNPARIWKARQSPRVACWGRKHTGGGVHHKQSWGRMAGRGATPTLLISLCRSLVTISSRTSPSPLIS
Nucleotide Sequence CTGCCCAGGCTGGGCCGCCAGCGTCGTCCACAGGCCTTGGCCAGCGGGGGCCCTCAGGGAAGCAACCCAGCTCGCATCTGGAAGGCCAGGCAGTCCCCTCGGGTGGCTTGCTGGGGAAGAAAGCACACAGGAGGAGGGGTACATCACAAACAGAGCTGGGGGCGGATGGCAGGCAGAGGGGCCACACCCACCTTGTTGATCTCTCTGTGTCGTTCTTTGGTTACGATTTCCTCTAGGACCTCGCCATCTCCCTTAATAAGC
CircID chr12:122982469|122982729
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MEGQAVPSGGLLGKKAHRRRGTSQTELGADGRQRGHTHLVDLSVSFFGYDFL
Nucleotide Sequence CTGGAAGGCCAGGCAGTCCCCTCGGGTGGCTTGCTGGGGAAGAAAGCACACAGGAGGAGGGGTACATCACAAACAGAGCTGGGGGCGGATGGCAGGCAGAGGGGCCACACCCACCTTGTTGATCTCTCTGTGTCGTTCTTTGGTTACGATTTCCTCTAG
CircID chr12:122982469|122982729
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MFVMYPSSCVLSSPASHPRGLPGLPDASWVASLRAPAGQGLWTTLAAQPGQ
Nucleotide Sequence CTGTTTGTGATGTACCCCTCCTCCTGTGTGCTTTCTTCCCCAGCAAGCCACCCGAGGGGACTGCCTGGCCTTCCAGATGCGAGCTGGGTTGCTTCCCTGAGGGCCCCCGCTGGCCAAGGCCTGTGGACGACGCTGGCGGCCCAGCCTGGGCAG
CircID chr12:122982469|122982729
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MPSAPSSVCDVPLLLCAFFPSKPPEGTAWPSRCELGCFPEGPRWPRPVDDAGGPAWA
Nucleotide Sequence CTGCCATCCGCCCCCAGCTCTGTTTGTGATGTACCCCTCCTCCTGTGTGCTTTCTTCCCCAGCAAGCCACCCGAGGGGACTGCCTGGCCTTCCAGATGCGAGCTGGGTTGCTTCCCTGAGGGCCCCCGCTGGCCAAGGCCTGTGGACGACGCTGGCGGCCCAGCCTGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab