CircRNA Information

General Information
circRNA Basic Information
CircID chr12:123291595|123291776
Strand +
CircType exon
Host Gene ENSG00000139697.10;
Algorism CIRI2;
Sequence CTGTTTCTCCCTTTTCCCTCTTCCCTTCAGCTCTATTTATTCTTTTCTTGACTTTCCCATATGGGGCATCTTATGACTTTTTTTTTTTTTTTTTTTTAAGAAAAGTATGGAAAACTTTTCATTTAGAAAAGTATTTGTTCCTGTATTTTAGAATTCAGTTTTGCATCTTTGCTGTAGAATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:123291595|123291776 hsa-miR-186-5p 0 0 1
chr12:123291595|123291776 hsa-miR-186-3p 0 0 1
chr12:123291595|123291776 hsa-miR-545-5p 0 0 1
chr12:123291595|123291776 hsa-miR-545-3p 0 0 1
chr12:123291595|123291776 hsa-miR-561-5p 0 0 1
chr12:123291595|123291776 hsa-miR-561-3p 0 0 1
chr12:123291595|123291776 hsa-miR-587 0 0 1
chr12:123291595|123291776 hsa-miR-1323 0 0 1
chr12:123291595|123291776 hsa-miR-873-5p 0 0 1
chr12:123291595|123291776 hsa-miR-873-3p 0 0 1
chr12:123291595|123291776 hsa-miR-548e-5p 0 0 1
chr12:123291595|123291776 hsa-miR-548e-3p 0 0 1
chr12:123291595|123291776 hsa-miR-548o-3p 0 0 1
chr12:123291595|123291776 hsa-miR-548o 0 0 1
chr12:123291595|123291776 hsa-miR-139-5p 0 0 1
chr12:123291595|123291776 hsa-miR-576-5p 0 0 1
chr12:123291595|123291776 hsa-miR-548a-3p 0 0 1
chr12:123291595|123291776 hsa-miR-548f 0 0 1
chr12:123291595|123291776 hsa-miR-658 1 0 0
chr12:123291595|123291776 hsa-miR-765 1 0 0
chr12:123291595|123291776 hsa-miR-920 1 0 0
chr12:123291595|123291776 hsa-miR-3132 1 0 0
chr12:123291595|123291776 hsa-miR-3153 1 1 0
chr12:123291595|123291776 hsa-miR-3154 1 0 0
chr12:123291595|123291776 hsa-miR-3175 1 0 0
chr12:123291595|123291776 hsa-miR-4298 1 0 0
chr12:123291595|123291776 hsa-miR-4271 1 0 0
chr12:123291595|123291776 hsa-miR-4427 1 0 0
chr12:123291595|123291776 hsa-miR-4441 1 0 0
chr12:123291595|123291776 hsa-miR-4468 1 0 0
chr12:123291595|123291776 hsa-miR-4476 1 0 0
chr12:123291595|123291776 hsa-miR-4487 1 0 0
chr12:123291595|123291776 hsa-miR-4516 1 0 0
chr12:123291595|123291776 hsa-miR-4644 1 0 0
chr12:123291595|123291776 hsa-miR-4656 1 1 0
chr12:123291595|123291776 hsa-miR-4688 1 0 0
chr12:123291595|123291776 hsa-miR-4739 1 1 0
chr12:123291595|123291776 hsa-miR-4779 1 0 0
chr12:123291595|123291776 hsa-miR-5703 1 0 0
chr12:123291595|123291776 hsa-miR-6088 1 0 0
chr12:123291595|123291776 hsa-miR-6124 1 1 0
chr12:123291595|123291776 hsa-miR-6165 1 0 0
chr12:123291595|123291776 hsa-miR-7515 1 1 0
chr12:123291595|123291776 hsa-miR-8085 1 0 0
chr12:123291595|123291776 hsa-miR-9500 1 1 0
chr12:123291595|123291776 hsa-miR-12118 1 0 0
chr12:123291595|123291776 hsa-miR-12119 1 0 0
chr12:123291595|123291776 hsa-miR-12136 0 1 0
chr12:123291595|123291776 hsa-miR-6734-5p 1 0 0
chr12:123291595|123291776 hsa-miR-671-5p 1 0 0
chr12:123291595|123291776 hsa-miR-7106-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6894-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6728-5p 1 0 0
chr12:123291595|123291776 hsa-miR-5187-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6873-5p 1 1 0
chr12:123291595|123291776 hsa-miR-6880-5p 1 0 0
chr12:123291595|123291776 hsa-miR-4695-5p 1 0 0
chr12:123291595|123291776 hsa-miR-197-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6716-5p 1 0 0
chr12:123291595|123291776 hsa-miR-1292-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6798-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6760-5p 1 1 0
chr12:123291595|123291776 hsa-miR-6874-5p 1 0 0
chr12:123291595|123291776 hsa-miR-5088-5p 1 0 0
chr12:123291595|123291776 hsa-miR-1229-5p 1 0 0
chr12:123291595|123291776 hsa-miR-4732-5p 1 0 0
chr12:123291595|123291776 hsa-miR-3202 1 0 0
chr12:123291595|123291776 hsa-miR-4446-3p 1 0 0
chr12:123291595|123291776 hsa-miR-149-3p 1 0 0
chr12:123291595|123291776 hsa-miR-6830-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6824-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6877-5p 1 0 0
chr12:123291595|123291776 hsa-miR-5584-5p 1 1 0
chr12:123291595|123291776 hsa-miR-423-5p 1 0 0
chr12:123291595|123291776 hsa-miR-5003-3p 0 1 0
chr12:123291595|123291776 hsa-miR-5699-5p 1 0 0
chr12:123291595|123291776 hsa-miR-4444 1 0 0
chr12:123291595|123291776 hsa-miR-1343-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6726-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6754-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6851-5p 1 0 0
chr12:123291595|123291776 hsa-miR-11181-3p 1 0 0
chr12:123291595|123291776 hsa-miR-1249-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6788-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6797-5p 1 1 0
chr12:123291595|123291776 hsa-miR-5196-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6780b-5p 1 1 0
chr12:123291595|123291776 hsa-miR-10526-3p 1 0 0
chr12:123291595|123291776 hsa-miR-4649-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6729-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6735-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6738-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6858-5p 1 0 0
chr12:123291595|123291776 hsa-miR-30c-1-3p 1 0 0
chr12:123291595|123291776 hsa-miR-6731-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6739-5p 0 1 0
chr12:123291595|123291776 hsa-miR-6758-5p 1 0 0
chr12:123291595|123291776 hsa-miR-4747-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6891-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6750-5p 1 0 0
chr12:123291595|123291776 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:123291595|123291776
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MTFPYGASYDFFFFFFLRKVWKTFHLEKYLFLYFRIQFCIFAVEF
Nucleotide Sequence TTGACTTTCCCATATGGGGCATCTTATGACTTTTTTTTTTTTTTTTTTTTAAGAAAAGTATGGAAAACTTTTCATTTAGAAAAGTATTTGTTCCTGTATTTTAGAATTCAGTTTTGCATCTTTGCTGTAGAATTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab