CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12330189|12330459
Strand +
CircType exon
Host Gene ENSG00000111261.12;
Algorism CIRI2;
Sequence ACGGGCTGCGGCTACACTCCAAGCAATGGCTACAACAGCAGTTCTGACTACCACCTTTCAGGCACCTACGGACTCGAAAGGCAGCTTAGAAACCATACCGTTTACAGAAATCTCCAACCTAACTTTGAACACAGGGAATGTGTATAACCCTACTGCACTTTCTATGTCAAATGTGGAGTCTTCCACTATGAATAAAACTGCTTCCTGGGAAGGTAGGGAGGCCAGTCCAGGCAGTTCCTCCCAGGGCAGTGTTCCAGAAAATCAGTACGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12330189|12330459 hsa-miR-17-5p 0 0 1
chr12:12330189|12330459 hsa-miR-17-3p 0 0 1
chr12:12330189|12330459 hsa-miR-20a-5p 0 0 1
chr12:12330189|12330459 hsa-miR-20a-3p 0 0 1
chr12:12330189|12330459 hsa-miR-22-5p 0 0 1
chr12:12330189|12330459 hsa-miR-22-3p 0 0 1
chr12:12330189|12330459 hsa-miR-30a-5p 0 0 1
chr12:12330189|12330459 hsa-miR-30a-3p 0 0 1
chr12:12330189|12330459 hsa-miR-93-5p 0 0 1
chr12:12330189|12330459 hsa-miR-93-3p 0 0 1
chr12:12330189|12330459 hsa-miR-106a-5p 0 0 1
chr12:12330189|12330459 hsa-miR-106a-3p 0 0 1
chr12:12330189|12330459 hsa-miR-30d-5p 0 0 1
chr12:12330189|12330459 hsa-miR-30d-3p 0 0 1
chr12:12330189|12330459 hsa-miR-30b-5p 0 0 1
chr12:12330189|12330459 hsa-miR-30b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-122-5p 0 0 1
chr12:12330189|12330459 hsa-miR-122-3p 0 0 1
chr12:12330189|12330459 hsa-miR-141-5p 0 0 1
chr12:12330189|12330459 hsa-miR-141-3p 0 0 1
chr12:12330189|12330459 hsa-miR-106b-5p 0 0 1
chr12:12330189|12330459 hsa-miR-106b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-200a-5p 0 0 1
chr12:12330189|12330459 hsa-miR-200a-3p 0 0 1
chr12:12330189|12330459 hsa-miR-30e-5p 0 0 1
chr12:12330189|12330459 hsa-miR-30e-3p 0 0 1
chr12:12330189|12330459 hsa-miR-376c-5p 0 0 1
chr12:12330189|12330459 hsa-miR-376c-3p 0 0 1
chr12:12330189|12330459 hsa-miR-422a 0 0 1
chr12:12330189|12330459 hsa-miR-20b-5p 0 0 1
chr12:12330189|12330459 hsa-miR-20b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-376b-5p 0 0 1
chr12:12330189|12330459 hsa-miR-376b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-488-5p 0 0 1
chr12:12330189|12330459 hsa-miR-488-3p 0 0 1
chr12:12330189|12330459 hsa-miR-489-5p 0 0 1
chr12:12330189|12330459 hsa-miR-489-3p 0 0 1
chr12:12330189|12330459 hsa-miR-432-5p 0 0 1
chr12:12330189|12330459 hsa-miR-432-3p 0 0 1
chr12:12330189|12330459 hsa-miR-193b-5p 0 0 1
chr12:12330189|12330459 hsa-miR-193b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-519d-5p 0 0 1
chr12:12330189|12330459 hsa-miR-519d-3p 0 0 1
chr12:12330189|12330459 hsa-miR-520g-5p 0 0 1
chr12:12330189|12330459 hsa-miR-520g-3p 0 0 1
chr12:12330189|12330459 hsa-miR-520h 0 0 1
chr12:12330189|12330459 hsa-miR-553 0 0 1
chr12:12330189|12330459 hsa-miR-584-5p 0 0 1
chr12:12330189|12330459 hsa-miR-584-3p 0 0 1
chr12:12330189|12330459 hsa-miR-620 0 0 1
chr12:12330189|12330459 hsa-miR-661 0 0 1
chr12:12330189|12330459 hsa-miR-874-5p 0 0 1
chr12:12330189|12330459 hsa-miR-874-3p 0 0 1
chr12:12330189|12330459 hsa-miR-1299 0 1 1
chr12:12330189|12330459 hsa-miR-1270 1 0 1
chr12:12330189|12330459 hsa-miR-1288-5p 0 0 1
chr12:12330189|12330459 hsa-miR-1288-3p 0 0 1
chr12:12330189|12330459 hsa-miR-296-3p 0 0 1
chr12:12330189|12330459 hsa-miR-146b-3p 0 1 1
chr12:12330189|12330459 hsa-miR-339-5p 0 0 1
chr12:12330189|12330459 hsa-miR-875-3p 0 0 1
chr12:12330189|12330459 hsa-miR-576-5p 0 0 1
chr12:12330189|12330459 hsa-miR-519b-3p 0 0 1
chr12:12330189|12330459 hsa-miR-519c-3p 0 0 1
chr12:12330189|12330459 hsa-miR-193a-3p 0 1 1
chr12:12330189|12330459 hsa-miR-1274a 0 0 1
chr12:12330189|12330459 hsa-miR-550 0 0 1
chr12:12330189|12330459 hsa-miR-1274b 0 0 1
chr12:12330189|12330459 hsa-miR-30c 0 0 1
chr12:12330189|12330459 hsa-miR-7 0 0 1
chr12:12330189|12330459 hsa-miR-378 0 0 1
chr12:12330189|12330459 hsa-miR-1269 0 0 1
chr12:12330189|12330459 hsa-miR-664 0 0 1
chr12:12330189|12330459 hsa-miR-514 0 0 1
chr12:12330189|12330459 hsa-miR-516b 0 0 1
chr12:12330189|12330459 hsa-miR-1254 0 0 1
chr12:12330189|12330459 hsa-miR-376a 0 0 1
chr12:12330189|12330459 hsa-miR-1201 0 0 1
chr12:12330189|12330459 hsa-miR-519a 0 0 1
chr12:12330189|12330459 hsa-miR-1183 1 0 0
chr12:12330189|12330459 hsa-miR-1269a 0 1 0
chr12:12330189|12330459 hsa-miR-4507 1 0 0
chr12:12330189|12330459 hsa-miR-4515 0 1 0
chr12:12330189|12330459 hsa-miR-1269b 0 1 0
chr12:12330189|12330459 hsa-miR-4538 1 0 0
chr12:12330189|12330459 hsa-miR-7-5p 0 1 0
chr12:12330189|12330459 hsa-miR-766-5p 0 1 0
chr12:12330189|12330459 hsa-miR-3192-5p 0 1 0
chr12:12330189|12330459 hsa-miR-3677-5p 1 0 0
chr12:12330189|12330459 hsa-miR-6730-5p 0 1 0
chr12:12330189|12330459 hsa-miR-6741-5p 1 0 0
chr12:12330189|12330459 hsa-miR-3928-3p 0 1 0
chr12:12330189|12330459 hsa-miR-6806-5p 1 0 0
chr12:12330189|12330459 hsa-miR-7108-5p 1 0 0
chr12:12330189|12330459 hsa-miR-6882-3p 0 1 0
chr12:12330189|12330459 hsa-miR-6878-3p 0 1 0
chr12:12330189|12330459 hsa-miR-6778-3p 0 1 0
chr12:12330189|12330459 hsa-miR-3162-3p 0 1 0
chr12:12330189|12330459 hsa-miR-6779-5p 0 1 0
chr12:12330189|12330459 hsa-miR-6780a-5p 0 1 0
chr12:12330189|12330459 hsa-miR-3940-5p 1 0 0
chr12:12330189|12330459 hsa-miR-3116 0 1 0
chr12:12330189|12330459 hsa-miR-550a-3-5p 0 1 0
chr12:12330189|12330459 hsa-miR-550a-5p 1 1 0
chr12:12330189|12330459 hsa-miR-6762-5p 1 0 0
chr12:12330189|12330459 hsa-miR-1912-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:12330189|12330459
ORF Type ORF1
Protein Length 82
Nucleotide Length 246
Protein Sequence MATTAVLTTTFQAPTDSKGSLETIPFTEISNLTLNTGNVYNPTALSMSNVESSTMNKTASWEGREASPGSSSQGSVPENQYG
Nucleotide Sequence ATGGCTACAACAGCAGTTCTGACTACCACCTTTCAGGCACCTACGGACTCGAAAGGCAGCTTAGAAACCATACCGTTTACAGAAATCTCCAACCTAACTTTGAACACAGGGAATGTGTATAACCCTACTGCACTTTCTATGTCAAATGTGGAGTCTTCCACTATGAATAAAACTGCTTCCTGGGAAGGTAGGGAGGCCAGTCCAGGCAGTTCCTCCCAGGGCAGTGTTCCAGAAAATCAGTACGGC
CircID chr12:12330189|12330459
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MIFWNTALGGTAWTGLPTFPGSSFIHSGRLHI
Nucleotide Sequence CTGATTTTCTGGAACACTGCCCTGGGAGGAACTGCCTGGACTGGCCTCCCTACCTTCCCAGGAAGCAGTTTTATTCATAGTGGAAGACTCCACATTTGA
CircID chr12:12330189|12330459
ORF Type ORF3
Protein Length 63
Nucleotide Length 192
Protein Sequence MPWEELPGLASLPSQEAVLFIVEDSTFDIESAVGLYTFPVFKVRLEISVNGMVSKLPFESVGA
Nucleotide Sequence CTGCCCTGGGAGGAACTGCCTGGACTGGCCTCCCTACCTTCCCAGGAAGCAGTTTTATTCATAGTGGAAGACTCCACATTTGACATAGAAAGTGCAGTAGGGTTATACACATTCCCTGTGTTCAAAGTTAGGTTGGAGATTTCTGTAAACGGTATGGTTTCTAAGCTGCCTTTCGAGTCCGTAGGTGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab