CircNet

General Information

circRNA Basic Information

CircID	chr12:123313620\|123323831
Strand	-
CircType	exon
Host Gene	ENSG00000139697.12;
Algorism	CIRI2;find_circ;DCC;
Sequence	AGGTGTGTTGCAGTCACTCATTGAAAAACATTTTCCTGCTCCAGACAGGAAAAAACTTTATAGTTTACTAGGAATCGATTTGACAGCTCCAAGTAACAACAGTTCGCCAAGAGATAGTCCTTGTAAAGAAAATAAAATAAAGAAGCGGAAAGGTGAAGAAATAACTCGAGAAGCCAAAAAAGCACGAAAAGTAGGTGGCCTTACTGGTAGCAGTTCTGACGACAGTGGAAGTGAATCTGATGCCTCTGATAATGAAGAAAGTGACTATGAGAGCTCTAAAAACATGAGTTCTGGAGATGATGACGATTTCAACCCATTTTTAGATGAGTCTAATGAGGATGATGAAAATGGACGTACTCATAGATCAAACCAAGTTACTGCTCCTGAGTATGTCTTTCTGATATCTGAACTGGCAGGAGAACAAAGATTTGCATCTATTGTTGCTAAAAGACTTGAGAGTTTGGGGGCACTTACACATGGTGATAGAAGGGCAACAGAATCTAGAGATCTGAGCAGGTTCAACTTTGATAATAAGTATGGAAGAAATGCTTTAGAAATTGTCATGAAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTATCCTGGAGAATTTTTTAAAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr12:123313620\|123323831	hsa-miR-197-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr12:123313620\|123323831
ORF Type	ORF1
Protein Length	210
Nucleotide Length	630
Protein Sequence	VLQSLIEKHFPAPDRKKLYSLLGIDLTAPSNNSSPRDSPCKENKIKKRKGEEITREAKKARKVGGLTGSSSDDSGSESDASDNEESDYESSKNMSSGDDDDFNPFLDESNEDDENGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTHGDRRATESRDLSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPPPDYPGEFFK
Nucleotide Sequence	GTGTTGCAGTCACTCATTGAAAAACATTTTCCTGCTCCAGACAGGAAAAAACTTTATAGTTTACTAGGAATCGATTTGACAGCTCCAAGTAACAACAGTTCGCCAAGAGATAGTCCTTGTAAAGAAAATAAAATAAAGAAGCGGAAAGGTGAAGAAATAACTCGAGAAGCCAAAAAAGCACGAAAAGTAGGTGGCCTTACTGGTAGCAGTTCTGACGACAGTGGAAGTGAATCTGATGCCTCTGATAATGAAGAAAGTGACTATGAGAGCTCTAAAAACATGAGTTCTGGAGATGATGACGATTTCAACCCATTTTTAGATGAGTCTAATGAGGATGATGAAAATGGACGTACTCATAGATCAAACCAAGTTACTGCTCCTGAGTATGTCTTTCTGATATCTGAACTGGCAGGAGAACAAAGATTTGCATCTATTGTTGCTAAAAGACTTGAGAGTTTGGGGGCACTTACACATGGTGATAGAAGGGCAACAGAATCTAGAGATCTGAGCAGGTTCAACTTTGATAATAAGTATGGAAGAAATGCTTTAGAAATTGTCATGAAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTATCCTGGAGAATTTTTTAAA

CircID	chr12:123313620\|123323831
ORF Type	ORF2
Protein Length	72
Nucleotide Length	216
Protein Sequence	MDFMTISKAFLPYLLSKLNLLRSLDSVALLSPCVSAPKLSSLLATIDANLCSPASSDIRKTYSGAVTWFDL*
Nucleotide Sequence	ATGGATTTCATGACAATTTCTAAAGCATTTCTTCCATACTTATTATCAAAGTTGAACCTGCTCAGATCTCTAGATTCTGTTGCCCTTCTATCACCATGTGTAAGTGCCCCCAAACTCTCAAGTCTTTTAGCAACAATAGATGCAAATCTTTGTTCTCCTGCCAGTTCAGATATCAGAAAGACATACTCAGGAGCAGTAACTTGGTTTGATCTATGA

CircID	chr12:123313620\|123323831
ORF Type	ORF3
Protein Length	38
Nucleotide Length	114
Protein Sequence	MCKCPQTLKSFSNNRCKSLFSCQFRYQKDILRSSNLV*
Nucleotide Sequence	ATGTGTAAGTGCCCCCAAACTCTCAAGTCTTTTAGCAACAATAGATGCAAATCTTTGTTCTCCTGCCAGTTCAGATATCAGAAAGACATACTCAGGAGCAGTAACTTGGTTTGA

CircID	chr12:123313620\|123323831
ORF Type	ORF4
Protein Length	56
Nucleotide Length	168
Protein Sequence	VLFWLLELFLHLSASLFYFLYKDYLLANCCYLELSNRFLVNYKVFSCLEQENVFQ*
Nucleotide Sequence	GTGCTTTTTTGGCTTCTCGAGTTATTTCTTCACCTTTCCGCTTCTTTATTTTATTTTCTTTACAAGGACTATCTCTTGGCGAACTGTTGTTACTTGGAGCTGTCAAATCGATTCCTAGTAAACTATAAAGTTTTTTCCTGTCTGGAGCAGGAAAATGTTTTTCAATGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr12:123313620\|123323831	NOP56	0	0	1
chr12:123313620\|123323831	MOV10	0	1	1
chr12:123313620\|123323831	ELAVL1	4	2	3
chr12:123313620\|123323831	DHX9	0	0	1
chr12:123313620\|123323831	SF3B4	1	0	0
chr12:123313620\|123323831	FAM120A	0	0	1
chr12:123313620\|123323831	KHDRBS1	2	0	1
chr12:123313620\|123323831	PRPF8	1	4	1
chr12:123313620\|123323831	UPF1	0	1	0
chr12:123313620\|123323831	TNRC6A	0	0	1
chr12:123313620\|123323831	FMR1	0	1	11
chr12:123313620\|123323831	CPSF6	1	0	2
chr12:123313620\|123323831	TROVE2	1	1	0
chr12:123313620\|123323831	SRSF1	1	0	6
chr12:123313620\|123323831	NOP58	0	1	4
chr12:123313620\|123323831	U2AF2	14	3	2
chr12:123313620\|123323831	HNRNPU	2	0	0
chr12:123313620\|123323831	DDX54	0	3	18
chr12:123313620\|123323831	HNRNPA2B1	0	0	1
chr12:123313620\|123323831	SF3A3	2	0	0
chr12:123313620\|123323831	PTBP1	0	0	2
chr12:123313620\|123323831	HNRNPC	5	5	0
chr12:123313620\|123323831	YWHAG	0	0	1
chr12:123313620\|123323831	ZNF184	0	0	2
chr12:123313620\|123323831	HNRNPA1	2	0	0
chr12:123313620\|123323831	SMNDC1	2	0	2
chr12:123313620\|123323831	MSI2	0	0	2
chr12:123313620\|123323831	MSI1	0	1	0
chr12:123313620\|123323831	ACIN1	0	0	6
chr12:123313620\|123323831	LIN28B	1	0	1
chr12:123313620\|123323831	LIN28A	0	0	2
chr12:123313620\|123323831	FXR1	1	2	9
chr12:123313620\|123323831	FXR2	0	0	4
chr12:123313620\|123323831	NUMA1	0	0	1
chr12:123313620\|123323831	IGF2BP2	0	1	7
chr12:123313620\|123323831	ELAVL3	1	0	0
chr12:123313620\|123323831	AUH	1	0	0
chr12:123313620\|123323831	BUD13	1	0	1
chr12:123313620\|123323831	RBFOX2	1	0	0
chr12:123313620\|123323831	RBM47	1	0	5
chr12:123313620\|123323831	SLTM	0	0	1
chr12:123313620\|123323831	EIF4G2	0	0	2
chr12:123313620\|123323831	DDX42	0	0	1
chr12:123313620\|123323831	CSTF2T	0	1	4
chr12:123313620\|123323831	SAFB2	0	0	5
chr12:123313620\|123323831	TIAL1	0	1	0
chr12:123313620\|123323831	TRA2A	0	0	4
chr12:123313620\|123323831	AGO2	1	0	2
chr12:123313620\|123323831	EIF4A3	2	1	8
chr12:123313620\|123323831	FBL	1	1	2

CircRNA Information