CircRNA Information

General Information
circRNA Basic Information
CircID chr12:123584555|123584816
Strand +
CircType exon
Host Gene ENSG00000247373.3;
Algorism CIRI2;
Sequence CTCCACGTCGATGTCCAGGAAGCCGCCCTCCGCCACCTCGAAGATGAGGCCCATCTTGGTGCCCGAGGTGACCCGCTCAAAGAAGCACTCTTCAGCATGGGCGTCGATGCTAACGAAATAGCCCGAGACCGTGGCCAGGAGAGCGGCCAGAAGCACCAGCAGTTCAGCAAGCGTCACCATGGTGGGGCTGAGGCCGAAGCCAGGACCCGGACTGCGGCCTCCACAGCCGCCGCCGCCGCCGCCGCCGCCGCCCCGCTGCCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:123584555|123584816 hsa-miR-520f-5p 0 0 1
chr12:123584555|123584816 hsa-miR-520f-3p 0 0 1
chr12:123584555|123584816 hsa-miR-588 0 0 1
chr12:123584555|123584816 hsa-miR-650 0 0 1
chr12:123584555|123584816 hsa-miR-658 0 0 1
chr12:123584555|123584816 hsa-miR-744-5p 0 0 1
chr12:123584555|123584816 hsa-miR-744-3p 0 0 1
chr12:123584555|123584816 hsa-miR-1234-3p 0 0 1
chr12:123584555|123584816 hsa-miR-1234 0 0 1
chr12:123584555|123584816 hsa-miR-885-3p 1 1 1
chr12:123584555|123584816 hsa-miR-628-5p 0 0 1
chr12:123584555|123584816 hsa-miR-516a-3p 0 0 1
chr12:123584555|123584816 hsa-miR-138 0 0 1
chr12:123584555|123584816 hsa-miR-608 1 1 0
chr12:123584555|123584816 hsa-miR-663a 1 0 0
chr12:123584555|123584816 hsa-miR-1295a 0 1 0
chr12:123584555|123584816 hsa-miR-1322 1 0 0
chr12:123584555|123584816 hsa-miR-2861 1 0 0
chr12:123584555|123584816 hsa-miR-3141 1 0 0
chr12:123584555|123584816 hsa-miR-3181 1 0 0
chr12:123584555|123584816 hsa-miR-3196 1 1 0
chr12:123584555|123584816 hsa-miR-4467 1 1 0
chr12:123584555|123584816 hsa-miR-4488 1 0 0
chr12:123584555|123584816 hsa-miR-4523 0 1 0
chr12:123584555|123584816 hsa-miR-4539 0 1 0
chr12:123584555|123584816 hsa-miR-3960 1 1 0
chr12:123584555|123584816 hsa-miR-4647 0 1 0
chr12:123584555|123584816 hsa-miR-4651 0 1 0
chr12:123584555|123584816 hsa-miR-4663 1 0 0
chr12:123584555|123584816 hsa-miR-4686 1 0 0
chr12:123584555|123584816 hsa-miR-4706 1 0 0
chr12:123584555|123584816 hsa-miR-4721 1 0 0
chr12:123584555|123584816 hsa-miR-4741 1 0 0
chr12:123584555|123584816 hsa-miR-5192 1 0 0
chr12:123584555|123584816 hsa-miR-7704 1 0 0
chr12:123584555|123584816 hsa-miR-8072 1 1 0
chr12:123584555|123584816 hsa-miR-103a-2-5p 0 1 0
chr12:123584555|123584816 hsa-miR-6765-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6894-5p 1 0 0
chr12:123584555|123584816 hsa-miR-139-3p 1 0 0
chr12:123584555|123584816 hsa-miR-6515-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6089 1 1 0
chr12:123584555|123584816 hsa-miR-7847-3p 0 1 0
chr12:123584555|123584816 hsa-miR-6762-3p 1 0 0
chr12:123584555|123584816 hsa-miR-6842-3p 1 0 0
chr12:123584555|123584816 hsa-miR-3187-3p 1 0 0
chr12:123584555|123584816 hsa-miR-6787-3p 1 0 0
chr12:123584555|123584816 hsa-miR-3180-3p 1 1 0
chr12:123584555|123584816 hsa-miR-6793-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6805-5p 1 0 0
chr12:123584555|123584816 hsa-miR-23a-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6782-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6850-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6786-5p 1 0 0
chr12:123584555|123584816 hsa-miR-1908-5p 1 0 0
chr12:123584555|123584816 hsa-miR-4787-5p 1 0 0
chr12:123584555|123584816 hsa-miR-3690 0 1 0
chr12:123584555|123584816 hsa-miR-6786-3p 0 1 0
chr12:123584555|123584816 hsa-miR-6743-3p 1 1 0
chr12:123584555|123584816 hsa-miR-4758-3p 0 1 0
chr12:123584555|123584816 hsa-miR-208a-5p 1 0 0
chr12:123584555|123584816 hsa-miR-10400-5p 1 1 0
chr12:123584555|123584816 hsa-miR-4763-3p 1 0 0
chr12:123584555|123584816 hsa-miR-6787-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6865-5p 0 1 0
chr12:123584555|123584816 hsa-miR-6775-5p 1 0 0
chr12:123584555|123584816 hsa-miR-1343-5p 1 0 0
chr12:123584555|123584816 hsa-miR-3180 1 0 0
chr12:123584555|123584816 hsa-miR-6756-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6803-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6815-5p 1 1 0
chr12:123584555|123584816 hsa-miR-1249-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6797-5p 1 0 0
chr12:123584555|123584816 hsa-miR-10396a-5p 0 1 0
chr12:123584555|123584816 hsa-miR-1237-5p 1 0 0
chr12:123584555|123584816 hsa-miR-328-5p 1 0 0
chr12:123584555|123584816 hsa-miR-449c-5p 1 0 0
chr12:123584555|123584816 hsa-miR-4632-5p 1 1 0
chr12:123584555|123584816 hsa-miR-4745-5p 1 0 0
chr12:123584555|123584816 hsa-miR-4697-5p 1 0 0
chr12:123584555|123584816 hsa-miR-4758-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6511a-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6785-5p 1 0 0
chr12:123584555|123584816 hsa-miR-6724-5p 1 0 0
chr12:123584555|123584816 hsa-miR-9851-3p 0 1 0
chr12:123584555|123584816 hsa-miR-3085-3p 1 0 0
chr12:123584555|123584816 hsa-miR-520d-3p 0 1 0
chr12:123584555|123584816 hsa-miR-103a-1-5p 0 1 0
chr12:123584555|123584816 hsa-miR-520c-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:123584555|123584816
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MGVDANEIARDRGQESGQKHQQFSKRHHGGAEAEARTRTAASTAAAAAAAAAPLP
Nucleotide Sequence ATGGGCGTCGATGCTAACGAAATAGCCCGAGACCGTGGCCAGGAGAGCGGCCAGAAGCACCAGCAGTTCAGCAAGCGTCACCATGGTGGGGCTGAGGCCGAAGCCAGGACCCGGACTGCGGCCTCCACAGCCGCCGCCGCCGCCGCCGCCGCCGCCCCGCTGCCT
CircID chr12:123584555|123584816
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MSRKPPSATSKMRPILVPEVTRSKKHSSAWASMLTK
Nucleotide Sequence ATGTCCAGGAAGCCGCCCTCCGCCACCTCGAAGATGAGGCCCATCTTGGTGCCCGAGGTGACCCGCTCAAAGAAGCACTCTTCAGCATGGGCGTCGATGCTAACGAAATAG
CircID chr12:123584555|123584816
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MVGLRPKPGPGLRPPQPPPPPPPPPRCL
Nucleotide Sequence ATGGTGGGGCTGAGGCCGAAGCCAGGACCCGGACTGCGGCCTCCACAGCCGCCGCCGCCGCCGCCGCCGCCGCCCCGCTGCCTT
CircID chr12:123584555|123584816
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE
Nucleotide Sequence ATGGTGACGCTTGCTGAACTGCTGGTGCTTCTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGCCCATGCTGAAGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCTTCCTGGACATCGACGTGGAG
CircID chr12:123584555|123584816
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MLNCWCFWPLSWPRSRAISLASTPMLKSASLSGSPRAPRWASSSRWRRAASWTSTW
Nucleotide Sequence TTGCTGAACTGCTGGTGCTTCTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGCCCATGCTGAAGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCTTCCTGGACATCGACGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab