CircRNA Information

General Information
circRNA Basic Information
CircID chr12:124014255|124014370
Strand +
CircType exon
Host Gene ENSG00000179195.14;
Algorism CIRI2;
Sequence CTCGGCATCTCTCCCCTTCCCCACTGCTTGCGAATGCCAGTGCTGGCCTGTTCCTTAAACGCACCAGCTCATCCCCCAGAGCAGCCTGTGTGCTCTGCCAGCGACTGCTACTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:124014255|124014370 hsa-miR-185-5p 0 0 1
chr12:124014255|124014370 hsa-miR-185-3p 0 0 1
chr12:124014255|124014370 hsa-miR-326 0 0 1
chr12:124014255|124014370 hsa-miR-558 0 0 1
chr12:124014255|124014370 hsa-miR-562 0 0 1
chr12:124014255|124014370 hsa-miR-625-5p 0 0 1
chr12:124014255|124014370 hsa-miR-625-3p 0 0 1
chr12:124014255|124014370 hsa-miR-637 1 0 1
chr12:124014255|124014370 hsa-miR-675-5p 0 0 1
chr12:124014255|124014370 hsa-miR-675-3p 0 0 1
chr12:124014255|124014370 hsa-miR-1255a 0 0 1
chr12:124014255|124014370 hsa-miR-1256 0 0 1
chr12:124014255|124014370 hsa-miR-1275 0 1 1
chr12:124014255|124014370 hsa-miR-491-5p 0 0 1
chr12:124014255|124014370 hsa-miR-556-5p 0 0 1
chr12:124014255|124014370 hsa-miR-330-5p 0 0 1
chr12:124014255|124014370 hsa-miR-1255b 0 0 1
chr12:124014255|124014370 hsa-miR-138 0 0 1
chr12:124014255|124014370 hsa-miR-608 1 0 0
chr12:124014255|124014370 hsa-miR-762 1 0 0
chr12:124014255|124014370 hsa-miR-2110 1 0 0
chr12:124014255|124014370 hsa-miR-548q 0 1 0
chr12:124014255|124014370 hsa-miR-3175 0 1 0
chr12:124014255|124014370 hsa-miR-4270 1 0 0
chr12:124014255|124014370 hsa-miR-4465 1 0 0
chr12:124014255|124014370 hsa-miR-4466 1 0 0
chr12:124014255|124014370 hsa-miR-4498 1 0 0
chr12:124014255|124014370 hsa-miR-4514 1 0 0
chr12:124014255|124014370 hsa-miR-4525 1 1 0
chr12:124014255|124014370 hsa-miR-1587 1 0 0
chr12:124014255|124014370 hsa-miR-4651 1 0 0
chr12:124014255|124014370 hsa-miR-4656 1 0 0
chr12:124014255|124014370 hsa-miR-4692 1 0 0
chr12:124014255|124014370 hsa-miR-6081 1 0 0
chr12:124014255|124014370 hsa-miR-8085 0 1 0
chr12:124014255|124014370 hsa-miR-12120 0 1 0
chr12:124014255|124014370 hsa-miR-138-5p 1 1 0
chr12:124014255|124014370 hsa-miR-4433b-3p 1 0 0
chr12:124014255|124014370 hsa-miR-6825-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6894-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6857-5p 1 0 0
chr12:124014255|124014370 hsa-miR-1972 0 1 0
chr12:124014255|124014370 hsa-miR-4687-3p 1 0 0
chr12:124014255|124014370 hsa-miR-4708-5p 0 1 0
chr12:124014255|124014370 hsa-miR-6089 1 0 0
chr12:124014255|124014370 hsa-miR-6742-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6732-5p 1 0 0
chr12:124014255|124014370 hsa-miR-3190-3p 1 0 0
chr12:124014255|124014370 hsa-miR-6798-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6782-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6810-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6786-5p 1 0 0
chr12:124014255|124014370 hsa-miR-1229-5p 1 0 0
chr12:124014255|124014370 hsa-miR-885-3p 1 0 0
chr12:124014255|124014370 hsa-miR-3202 0 1 0
chr12:124014255|124014370 hsa-miR-6824-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4684-3p 1 0 0
chr12:124014255|124014370 hsa-miR-5010-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6868-5p 0 1 0
chr12:124014255|124014370 hsa-miR-6792-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6767-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6812-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6816-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6870-5p 1 0 0
chr12:124014255|124014370 hsa-miR-1343-5p 1 0 0
chr12:124014255|124014370 hsa-miR-5001-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6726-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6752-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6756-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6769a-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6803-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6751-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6763-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6779-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6780a-5p 1 0 0
chr12:124014255|124014370 hsa-miR-7111-5p 1 0 0
chr12:124014255|124014370 hsa-miR-3620-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4728-5p 0 1 0
chr12:124014255|124014370 hsa-miR-5196-5p 1 1 0
chr12:124014255|124014370 hsa-miR-6780b-5p 1 1 0
chr12:124014255|124014370 hsa-miR-1237-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4649-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4701-3p 1 0 0
chr12:124014255|124014370 hsa-miR-4725-3p 1 1 0
chr12:124014255|124014370 hsa-miR-6729-5p 1 0 0
chr12:124014255|124014370 hsa-miR-6848-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4723-5p 1 0 0
chr12:124014255|124014370 hsa-miR-4665-5p 1 1 0
chr12:124014255|124014370 hsa-miR-7151-3p 0 1 0
chr12:124014255|124014370 hsa-miR-5588-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:124014255|124014370
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MRMPVLACSLNAPAHPPEQPVCSASDCYF
Nucleotide Sequence TTGCGAATGCCAGTGCTGGCCTGTTCCTTAAACGCACCAGCTCATCCCCCAGAGCAGCCTGTGTGCTCTGCCAGCGACTGCTACTTC
CircID chr12:124014255|124014370
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLANASAGLFLKRTSSSPRAACVLCQRLLLL
Nucleotide Sequence CTGCTTGCGAATGCCAGTGCTGGCCTGTTCCTTAAACGCACCAGCTCATCCCCCAGAGCAGCCTGTGTGCTCTGCCAGCGACTGCTACTTCTC
CircID chr12:124014255|124014370
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MGDELVRLRNRPALAFASSGEGERCR
Nucleotide Sequence CTGGGGGATGAGCTGGTGCGTTTAAGGAACAGGCCAGCACTGGCATTCGCAAGCAGTGGGGAAGGGGAGAGATGCCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab