CircRNA Information

General Information
circRNA Basic Information
CircID chr12:124400501|124400650
Strand -
CircType exon
Host Gene ENSG00000196498.12;
Algorism CIRI2;
Sequence CCAGCTCGGCGCTCTGCTGGGGGGTGATGGCCTCCTCGCTGTTGGCCTCATTAGCCATTGAGCGGGTGATGCGGCCTTTGCGTCTTCCCTGGCTGTTGGCAGTTTTGCGGCCTTTGGAGGCCACAGCCTCCTTCTCGTCGTTGTCCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:124400501|124400650 hsa-miR-1323 0 0 1
chr12:124400501|124400650 hsa-miR-922 0 1 1
chr12:124400501|124400650 hsa-miR-663b 0 0 1
chr12:124400501|124400650 hsa-miR-548e-5p 0 0 1
chr12:124400501|124400650 hsa-miR-548e-3p 0 0 1
chr12:124400501|124400650 hsa-miR-548o-3p 0 0 1
chr12:124400501|124400650 hsa-miR-548o 0 0 1
chr12:124400501|124400650 hsa-miR-485-5p 0 0 1
chr12:124400501|124400650 hsa-miR-339-3p 0 0 1
chr12:124400501|124400650 hsa-miR-361-3p 0 0 1
chr12:124400501|124400650 hsa-miR-548a-3p 0 0 1
chr12:124400501|124400650 hsa-miR-151-5p 0 0 1
chr12:124400501|124400650 hsa-miR-7 0 0 1
chr12:124400501|124400650 hsa-miR-548f 0 0 1
chr12:124400501|124400650 hsa-miR-4530 0 1 0
chr12:124400501|124400650 hsa-miR-4681 0 1 0
chr12:124400501|124400650 hsa-miR-4706 1 0 0
chr12:124400501|124400650 hsa-miR-4739 0 1 0
chr12:124400501|124400650 hsa-miR-5704 0 1 0
chr12:124400501|124400650 hsa-miR-7974 0 1 0
chr12:124400501|124400650 hsa-miR-9500 0 1 0
chr12:124400501|124400650 hsa-miR-6879-3p 0 1 0
chr12:124400501|124400650 hsa-miR-6894-5p 1 0 0
chr12:124400501|124400650 hsa-miR-6089 1 0 0
chr12:124400501|124400650 hsa-miR-4695-5p 0 1 0
chr12:124400501|124400650 hsa-miR-7154-3p 0 1 0
chr12:124400501|124400650 hsa-miR-6884-3p 0 1 0
chr12:124400501|124400650 hsa-miR-519d-5p 0 1 0
chr12:124400501|124400650 hsa-miR-4529-5p 0 1 0
chr12:124400501|124400650 hsa-miR-6768-3p 0 1 0
chr12:124400501|124400650 hsa-miR-7158-5p 0 1 0
chr12:124400501|124400650 hsa-miR-5196-5p 1 0 0
chr12:124400501|124400650 hsa-miR-4725-3p 0 1 0
chr12:124400501|124400650 hsa-miR-6795-5p 0 1 0
chr12:124400501|124400650 hsa-miR-6887-5p 0 1 0
chr12:124400501|124400650 hsa-miR-3679-5p 1 1 0
chr12:124400501|124400650 hsa-miR-4747-5p 1 1 0
chr12:124400501|124400650 hsa-miR-151a-5p 0 1 0
chr12:124400501|124400650 hsa-miR-10523-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr12:124400501|124400650
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MASSLLASLAIERVMRPLRLPWLLAVLRPLEATASFSSLSS
Nucleotide Sequence ATGGCCTCCTCGCTGTTGGCCTCATTAGCCATTGAGCGGGTGATGCGGCCTTTGCGTCTTCCCTGGCTGTTGGCAGTTTTGCGGCCTTTGGAGGCCACAGCCTCCTTCTCGTCGTTGTCCTCC

CircID chr12:124400501|124400650
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MWPPKAAKLPTAREDAKAASPAQWLMRPTARRPSPPSRAPSW
Nucleotide Sequence CTGTGGCCTCCAAAGGCCGCAAAACTGCCAACAGCCAGGGAAGACGCAAAGGCCGCATCACCCGCTCAATGGCTAATGAGGCCAACAGCGAGGAGGCCATCACCCCCCAGCAGAGCGCCGAGCTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites