CircRNA Information

General Information
circRNA Basic Information
CircID chr12:124495147|124495368
Strand -
CircType exon
Host Gene ENSG00000196498.12;
Algorism CIRI2;
Sequence CGTGTGCGTCCGGGCGATCTGCACTGGGTAGGAAAGGCTGTGGGGCGGGTAGCGGGGCTCAGTGGCCCTCCACGTCTGTGCCACAGGCTGTGTGGATCCCGACATGGTGGTGGGGGTCGGCGGGGAGCTGCTCCCAGGCCCCAATAAGCTTTCTCTTAATCACCACCAAGGATTAAAAGCCAGTCCTCGTCATCAGCTCACGGGCCACCCCGTCACTGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:124495147|124495368 hsa-miR-21-5p 0 0 1
chr12:124495147|124495368 hsa-miR-21-3p 0 0 1
chr12:124495147|124495368 hsa-miR-148a-5p 0 0 1
chr12:124495147|124495368 hsa-miR-148a-3p 0 0 1
chr12:124495147|124495368 hsa-miR-152-5p 0 0 1
chr12:124495147|124495368 hsa-miR-152-3p 0 0 1
chr12:124495147|124495368 hsa-miR-148b-5p 0 0 1
chr12:124495147|124495368 hsa-miR-148b-3p 0 0 1
chr12:124495147|124495368 hsa-miR-384 0 0 1
chr12:124495147|124495368 hsa-miR-558 0 0 1
chr12:124495147|124495368 hsa-miR-608 1 0 1
chr12:124495147|124495368 hsa-miR-611 0 0 1
chr12:124495147|124495368 hsa-miR-646 0 1 1
chr12:124495147|124495368 hsa-miR-661 0 0 1
chr12:124495147|124495368 hsa-miR-892b 0 1 1
chr12:124495147|124495368 hsa-miR-920 0 0 1
chr12:124495147|124495368 hsa-miR-663b 0 0 1
chr12:124495147|124495368 hsa-miR-1825 0 0 1
chr12:124495147|124495368 hsa-miR-1225-3p 1 1 1
chr12:124495147|124495368 hsa-miR-876-3p 0 0 1
chr12:124495147|124495368 hsa-miR-362-5p 0 0 1
chr12:124495147|124495368 hsa-miR-590-5p 0 0 1
chr12:124495147|124495368 hsa-miR-220b 0 0 1
chr12:124495147|124495368 hsa-miR-1233 0 0 1
chr12:124495147|124495368 hsa-miR-323-5p 0 0 1
chr12:124495147|124495368 hsa-miR-500 0 0 1
chr12:124495147|124495368 hsa-miR-663a 1 0 0
chr12:124495147|124495368 hsa-miR-718 1 0 0
chr12:124495147|124495368 hsa-miR-2861 0 1 0
chr12:124495147|124495368 hsa-miR-3131 0 1 0
chr12:124495147|124495368 hsa-miR-4323 0 1 0
chr12:124495147|124495368 hsa-miR-4260 0 1 0
chr12:124495147|124495368 hsa-miR-4252 0 1 0
chr12:124495147|124495368 hsa-miR-3685 0 1 0
chr12:124495147|124495368 hsa-miR-4502 0 1 0
chr12:124495147|124495368 hsa-miR-4651 1 1 0
chr12:124495147|124495368 hsa-miR-4706 1 0 0
chr12:124495147|124495368 hsa-miR-5190 0 1 0
chr12:124495147|124495368 hsa-miR-6081 0 1 0
chr12:124495147|124495368 hsa-miR-6863 0 1 0
chr12:124495147|124495368 hsa-miR-8075 0 1 0
chr12:124495147|124495368 hsa-miR-9899 1 0 0
chr12:124495147|124495368 hsa-miR-150-3p 0 1 0
chr12:124495147|124495368 hsa-miR-6749-3p 1 0 0
chr12:124495147|124495368 hsa-miR-323a-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6879-3p 1 0 0
chr12:124495147|124495368 hsa-miR-1227-5p 0 1 0
chr12:124495147|124495368 hsa-miR-181a-2-3p 0 1 0
chr12:124495147|124495368 hsa-miR-6732-5p 1 0 0
chr12:124495147|124495368 hsa-miR-7109-5p 1 0 0
chr12:124495147|124495368 hsa-miR-1247-5p 1 0 0
chr12:124495147|124495368 hsa-miR-1909-5p 1 0 0
chr12:124495147|124495368 hsa-miR-4707-3p 1 0 0
chr12:124495147|124495368 hsa-miR-4640-5p 0 1 0
chr12:124495147|124495368 hsa-miR-1908-5p 1 0 0
chr12:124495147|124495368 hsa-miR-7113-3p 0 1 0
chr12:124495147|124495368 hsa-miR-4713-3p 0 1 0
chr12:124495147|124495368 hsa-miR-6736-3p 0 1 0
chr12:124495147|124495368 hsa-miR-4781-3p 0 1 0
chr12:124495147|124495368 hsa-miR-4661-3p 0 1 0
chr12:124495147|124495368 hsa-miR-4758-3p 0 1 0
chr12:124495147|124495368 hsa-miR-500a-5p 0 1 0
chr12:124495147|124495368 hsa-miR-891a-3p 0 1 0
chr12:124495147|124495368 hsa-miR-6859-3p 0 1 0
chr12:124495147|124495368 hsa-miR-3124-3p 0 1 0
chr12:124495147|124495368 hsa-miR-1233-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6787-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6812-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6756-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6803-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6751-5p 1 0 0
chr12:124495147|124495368 hsa-miR-3620-5p 1 0 0
chr12:124495147|124495368 hsa-miR-10396b-5p 1 0 0
chr12:124495147|124495368 hsa-miR-4745-3p 1 0 0
chr12:124495147|124495368 hsa-miR-6729-5p 1 0 0
chr12:124495147|124495368 hsa-miR-6885-5p 1 0 0
chr12:124495147|124495368 hsa-miR-1199-5p 0 1 0
chr12:124495147|124495368 hsa-miR-6762-5p 1 1 0
chr12:124495147|124495368 hsa-miR-10401-3p 1 1 0
chr12:124495147|124495368 hsa-miR-10392-3p 1 0 0
chr12:124495147|124495368 hsa-miR-6751-3p 0 1 0
chr12:124495147|124495368 hsa-miR-3119 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:124495147|124495368
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MHWVGKAVGRVAGLSGPPRLCHRLCGSRHGGGGRRGAAPRPQ
Nucleotide Sequence CTGCACTGGGTAGGAAAGGCTGTGGGGCGGGTAGCGGGGCTCAGTGGCCCTCCACGTCTGTGCCACAGGCTGTGTGGATCCCGACATGGTGGTGGGGGTCGGCGGGGAGCTGCTCCCAGGCCCCAATAA
CircID chr12:124495147|124495368
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MVVGVGGELLPGPNKLSLNHHQGLKASPRHQLTGHPVTG
Nucleotide Sequence ATGGTGGTGGGGGTCGGCGGGGAGCTGCTCCCAGGCCCCAATAAGCTTTCTCTTAATCACCACCAAGGATTAAAAGCCAGTCCTCGTCATCAGCTCACGGGCCACCCCGTCACTGGC
CircID chr12:124495147|124495368
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MGRKGCGAGSGAQWPSTSVPQAVWIPTWWWGSAGSCSQAPISFLLITTKD
Nucleotide Sequence CTGGGTAGGAAAGGCTGTGGGGCGGGTAGCGGGGCTCAGTGGCCCTCCACGTCTGTGCCACAGGCTGTGTGGATCCCGACATGGTGGTGGGGGTCGGCGGGGAGCTGCTCCCAGGCCCCAATAAGCTTTCTCTTAATCACCACCAAGGATTAA
CircID chr12:124495147|124495368
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHT
Nucleotide Sequence TTGGGGCCTGGGAGCAGCTCCCCGCCGACCCCCACCACCATGTCGGGATCCACACAGCCTGTGGCACAGACGTGGAGGGCCACTGAGCCCCGCTACCCGCCCCACAGCCTTTCCTACCCAGTGCAGATCGCCCGGACGCACACG
CircID chr12:124495147|124495368
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MGAAPRRPPPPCRDPHSLWHRRGGPLSPATRPTAFPTQCRSPGRT
Nucleotide Sequence CTGGGAGCAGCTCCCCGCCGACCCCCACCACCATGTCGGGATCCACACAGCCTGTGGCACAGACGTGGAGGGCCACTGAGCCCCGCTACCCGCCCCACAGCCTTTCCTACCCAGTGCAGATCGCCCGGACGCACA
CircID chr12:124495147|124495368
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MVVIKRKLIGAWEQLPADPHHHVGIHTACGTDVEGH
Nucleotide Sequence TTGGTGGTGATTAAGAGAAAGCTTATTGGGGCCTGGGAGCAGCTCCCCGCCGACCCCCACCACCATGTCGGGATCCACACAGCCTGTGGCACAGACGTGGAGGGCCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab