CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12469927|12470055
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCTCATCCGCCGCTCACCTCCTGCTGTGCAGCACACTTCCTCACACGCCACAGATGGGTACCAGTCTGTGGCCTGGGGTTTGGAGACCCCTGATTTATGGTAAGTTAGTGAACAATAATGCCACCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12469927|12470055 hsa-miR-214-5p 0 0 1
chr12:12469927|12470055 hsa-miR-214-3p 0 0 1
chr12:12469927|12470055 hsa-miR-595 0 0 1
chr12:12469927|12470055 hsa-miR-648 0 0 1
chr12:12469927|12470055 hsa-miR-660-5p 0 0 1
chr12:12469927|12470055 hsa-miR-660-3p 0 0 1
chr12:12469927|12470055 hsa-miR-1294 0 0 1
chr12:12469927|12470055 hsa-miR-1255a 0 0 1
chr12:12469927|12470055 hsa-miR-1256 0 0 1
chr12:12469927|12470055 hsa-miR-1263 0 0 1
chr12:12469927|12470055 hsa-miR-515-5p 0 0 1
chr12:12469927|12470055 hsa-miR-1255b 0 0 1
chr12:12469927|12470055 hsa-miR-1183 1 0 0
chr12:12469927|12470055 hsa-miR-3936 1 0 0
chr12:12469927|12470055 hsa-miR-4430 1 0 0
chr12:12469927|12470055 hsa-miR-4458 1 0 0
chr12:12469927|12470055 hsa-miR-4530 1 0 0
chr12:12469927|12470055 hsa-miR-3960 0 1 0
chr12:12469927|12470055 hsa-miR-6127 1 0 0
chr12:12469927|12470055 hsa-miR-6130 1 0 0
chr12:12469927|12470055 hsa-miR-6134 1 0 0
chr12:12469927|12470055 hsa-miR-6165 1 1 0
chr12:12469927|12470055 hsa-miR-6860 1 0 0
chr12:12469927|12470055 hsa-miR-8072 0 1 0
chr12:12469927|12470055 hsa-miR-4433a-3p 1 0 0
chr12:12469927|12470055 hsa-miR-6765-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6825-5p 1 0 0
chr12:12469927|12470055 hsa-miR-1972 0 1 0
chr12:12469927|12470055 hsa-miR-6799-5p 1 0 0
chr12:12469927|12470055 hsa-miR-4695-5p 1 0 0
chr12:12469927|12470055 hsa-miR-4722-5p 1 1 0
chr12:12469927|12470055 hsa-miR-6732-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6805-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6798-5p 1 0 0
chr12:12469927|12470055 hsa-let-7d-5p 1 0 0
chr12:12469927|12470055 hsa-miR-4732-5p 1 0 0
chr12:12469927|12470055 hsa-miR-7854-3p 1 1 0
chr12:12469927|12470055 hsa-miR-4787-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6802-5p 1 0 0
chr12:12469927|12470055 hsa-let-7a-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6767-5p 0 1 0
chr12:12469927|12470055 hsa-miR-4717-5p 0 1 0
chr12:12469927|12470055 hsa-miR-6812-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6865-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6870-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6752-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6803-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6851-5p 1 1 0
chr12:12469927|12470055 hsa-miR-7110-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6722-3p 1 0 0
chr12:12469927|12470055 hsa-miR-6751-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6879-5p 1 0 0
chr12:12469927|12470055 hsa-miR-4728-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6780b-5p 1 0 0
chr12:12469927|12470055 hsa-miR-449c-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6858-5p 1 0 0
chr12:12469927|12470055 hsa-miR-6736-5p 1 0 0
chr12:12469927|12470055 hsa-miR-3619-5p 1 1 0
chr12:12469927|12470055 hsa-miR-1255b-5p 0 1 0
chr12:12469927|12470055 hsa-miR-6771-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:12469927|12470055
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence LLIRRSPPAVQHTSSHATDGYQSVAWGLETPDLW
Nucleotide Sequence CTGCTCATCCGCCGCTCACCTCCTGCTGTGCAGCACACTTCCTCACACGCCACAGATGGGTACCAGTCTGTGGCCTGGGGTTTGGAGACCCCTGATTTATGGTAA
CircID chr12:12469927|12470055
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MLCSTLPHTPQMGTSLWPGVWRPLIYGKLVNNNAT
Nucleotide Sequence CTGCTGTGCAGCACACTTCCTCACACGCCACAGATGGGTACCAGTCTGTGGCCTGGGGTTTGGAGACCCCTGATTTATGGTAAGTTAGTGAACAATAATGCCACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab