CircRNA Information

General Information
circRNA Basic Information
CircID chr12:125020401|125020553
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AACCCATTACAGATGCTAGGCTTTGAGTATTTGTGTCCCCCACAAAATTCCTATGTTGAAATCCTAACCCCAAAAGTGATGGTCTTAGGAGGTGGGGTCCTGGGGAGGTGATCAGGTCGTAGGGGTGGAGCCCCCATGAATGGGTTTAGTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:125020401|125020553 hsa-miR-625-5p 0 0 1
chr12:125020401|125020553 hsa-miR-625-3p 0 0 1
chr12:125020401|125020553 hsa-miR-651-5p 0 0 1
chr12:125020401|125020553 hsa-miR-651-3p 0 0 1
chr12:125020401|125020553 hsa-miR-660-5p 0 0 1
chr12:125020401|125020553 hsa-miR-660-3p 0 0 1
chr12:125020401|125020553 hsa-miR-421 0 0 1
chr12:125020401|125020553 hsa-miR-888-5p 0 0 1
chr12:125020401|125020553 hsa-miR-888-3p 0 0 1
chr12:125020401|125020553 hsa-miR-1305 0 0 1
chr12:125020401|125020553 hsa-miR-1258 0 1 1
chr12:125020401|125020553 hsa-miR-1275 0 0 1
chr12:125020401|125020553 hsa-miR-491-5p 0 0 1
chr12:125020401|125020553 hsa-miR-330-3p 0 0 1
chr12:125020401|125020553 hsa-miR-1224-3p 0 1 1
chr12:125020401|125020553 hsa-miR-876-5p 0 0 1
chr12:125020401|125020553 hsa-miR-1308 0 0 1
chr12:125020401|125020553 hsa-miR-6074 0 1 0
chr12:125020401|125020553 hsa-miR-6749-3p 1 0 0
chr12:125020401|125020553 hsa-miR-6840-3p 0 1 0
chr12:125020401|125020553 hsa-miR-766-3p 1 0 0
chr12:125020401|125020553 hsa-miR-4638-3p 1 0 0
chr12:125020401|125020553 hsa-miR-1306-5p 1 1 0
chr12:125020401|125020553 hsa-miR-1236-3p 1 0 0
chr12:125020401|125020553 hsa-miR-4758-3p 1 1 0
chr12:125020401|125020553 hsa-miR-1227-3p 1 0 0
chr12:125020401|125020553 hsa-miR-5195-5p 0 1 0
chr12:125020401|125020553 hsa-miR-3192-3p 0 1 0
chr12:125020401|125020553 hsa-miR-3162-3p 1 0 0
chr12:125020401|125020553 hsa-miR-5587-5p 1 0 0
chr12:125020401|125020553 hsa-miR-4665-5p 0 1 0
chr12:125020401|125020553 hsa-miR-6855-5p 0 1 0
chr12:125020401|125020553 hsa-miR-6784-3p 1 0 0
chr12:125020401|125020553 hsa-miR-6810-3p 1 0 0
chr12:125020401|125020553 hsa-miR-1234-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr12:125020401|125020553
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MLGFEYLCPPQNSYVEILTPKVMVLGGGVLGR
Nucleotide Sequence ATGCTAGGCTTTGAGTATTTGTGTCCCCCACAAAATTCCTATGTTGAAATCCTAACCCCAAAAGTGATGGTCTTAGGAGGTGGGGTCCTGGGGAGGTGA

CircID chr12:125020401|125020553
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MGAPPLRPDHLPRTPPPKTITFGVRIST
Nucleotide Sequence ATGGGGGCTCCACCCCTACGACCTGATCACCTCCCCAGGACCCCACCTCCTAAGACCATCACTTTTGGGGTTAGGATTTCAACATAG

CircID chr12:125020401|125020553
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MITSPGPHLLRPSLLGLGFQHRNFVGDTNTQSLASVMG
Nucleotide Sequence CTGATCACCTCCCCAGGACCCCACCTCCTAAGACCATCACTTTTGGGGTTAGGATTTCAACATAGGAATTTTGTGGGGGACACAAATACTCAAAGCCTAGCATCTGTAATGGGT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites