CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12625117|12625305
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGATTTCTCTCTTCTTCTCCATTCCTACTGAGAGGGACAGGGGACAGAAAATTCTAGACAGAAAAGGGTGGGTCCCCGACAAAACCCCATCCTCAAGCCGAAAAGCCTGAAATGACGGCCCAAAATGAGAACTTACATCCCTGTTTTCCCACTCGAATGTTGCCTTTTCCTAAATCACCCATGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12625117|12625305 hsa-miR-484 0 0 1
chr12:12625117|12625305 hsa-miR-539-5p 0 0 1
chr12:12625117|12625305 hsa-miR-539-3p 0 0 1
chr12:12625117|12625305 hsa-miR-570-5p 0 0 1
chr12:12625117|12625305 hsa-miR-570-3p 0 0 1
chr12:12625117|12625305 hsa-miR-651-5p 0 0 1
chr12:12625117|12625305 hsa-miR-651-3p 0 0 1
chr12:12625117|12625305 hsa-miR-543 0 0 1
chr12:12625117|12625305 hsa-miR-936 0 0 1
chr12:12625117|12625305 hsa-miR-1253 0 0 1
chr12:12625117|12625305 hsa-miR-1262 1 1 1
chr12:12625117|12625305 hsa-miR-1224-5p 0 0 1
chr12:12625117|12625305 hsa-miR-542-5p 0 0 1
chr12:12625117|12625305 hsa-miR-339-5p 0 1 1
chr12:12625117|12625305 hsa-miR-331-3p 0 0 1
chr12:12625117|12625305 hsa-miR-199b-3p 0 0 1
chr12:12625117|12625305 hsa-miR-199a-3p 0 0 1
chr12:12625117|12625305 hsa-miR-642 0 0 1
chr12:12625117|12625305 hsa-miR-1308 0 0 1
chr12:12625117|12625305 hsa-miR-1185 0 0 1
chr12:12625117|12625305 hsa-miR-608 1 0 0
chr12:12625117|12625305 hsa-miR-762 1 0 0
chr12:12625117|12625305 hsa-miR-1293 1 0 0
chr12:12625117|12625305 hsa-miR-2110 1 0 0
chr12:12625117|12625305 hsa-miR-2392 0 1 0
chr12:12625117|12625305 hsa-miR-1587 1 0 0
chr12:12625117|12625305 hsa-miR-4644 0 1 0
chr12:12625117|12625305 hsa-miR-4689 1 0 0
chr12:12625117|12625305 hsa-miR-4741 1 0 0
chr12:12625117|12625305 hsa-miR-12126 1 0 0
chr12:12625117|12625305 hsa-miR-135a-3p 1 0 0
chr12:12625117|12625305 hsa-miR-222-5p 0 1 0
chr12:12625117|12625305 hsa-miR-92a-2-5p 0 1 0
chr12:12625117|12625305 hsa-miR-6894-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6857-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6741-5p 1 0 0
chr12:12625117|12625305 hsa-miR-4655-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6742-5p 1 0 0
chr12:12625117|12625305 hsa-miR-3151-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6782-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6821-5p 1 0 0
chr12:12625117|12625305 hsa-miR-193b-5p 0 1 0
chr12:12625117|12625305 hsa-miR-6771-5p 1 0 0
chr12:12625117|12625305 hsa-miR-4743-3p 0 1 0
chr12:12625117|12625305 hsa-miR-6818-3p 0 1 0
chr12:12625117|12625305 hsa-miR-149-3p 1 0 0
chr12:12625117|12625305 hsa-miR-6781-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6877-5p 1 0 0
chr12:12625117|12625305 hsa-miR-1180-5p 0 1 0
chr12:12625117|12625305 hsa-miR-6748-3p 0 1 0
chr12:12625117|12625305 hsa-miR-1249-3p 1 0 0
chr12:12625117|12625305 hsa-miR-431-3p 1 0 0
chr12:12625117|12625305 hsa-miR-1233-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6769b-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6778-5p 1 1 0
chr12:12625117|12625305 hsa-miR-6756-5p 1 0 0
chr12:12625117|12625305 hsa-miR-10401-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6788-5p 0 1 0
chr12:12625117|12625305 hsa-miR-6797-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6852-3p 0 1 0
chr12:12625117|12625305 hsa-miR-3620-5p 1 0 0
chr12:12625117|12625305 hsa-miR-4701-3p 1 0 0
chr12:12625117|12625305 hsa-miR-4725-3p 1 0 0
chr12:12625117|12625305 hsa-miR-4745-5p 1 1 0
chr12:12625117|12625305 hsa-miR-6858-5p 1 0 0
chr12:12625117|12625305 hsa-miR-1238-5p 1 0 0
chr12:12625117|12625305 hsa-miR-4758-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6511a-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6736-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6855-5p 0 1 0
chr12:12625117|12625305 hsa-miR-6766-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6790-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6724-5p 1 0 0
chr12:12625117|12625305 hsa-miR-6862-3p 1 0 0
chr12:12625117|12625305 hsa-miR-7114-3p 0 1 0
chr12:12625117|12625305 hsa-miR-1234-3p 1 0 0
chr12:12625117|12625305 hsa-miR-7156-5p 1 0 0
chr12:12625117|12625305 hsa-miR-5699-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:12625117|12625305
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MTAQNENLHPCFPTRMLPFPKSPMA
Nucleotide Sequence ATGACGGCCCAAAATGAGAACTTACATCCCTGTTTTCCCACTCGAATGTTGCCTTTTCCTAAATCACCCATGGCC
CircID chr12:12625117|12625305
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence LISLFFSIPTERDRGQKILDRKGWVPDKTPSSSRKA
Nucleotide Sequence CTGATTTCTCTCTTCTTCTCCATTCCTACTGAGAGGGACAGGGGACAGAAAATTCTAGACAGAAAAGGGTGGGTCCCCGACAAAACCCCATCCTCAAGCCGAAAAGCCTGA
CircID chr12:12625117|12625305
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MGRHFRLFGLRMGFCRGPTLFCLEFSVPCPSQ
Nucleotide Sequence TTGGGCCGTCATTTCAGGCTTTTCGGCTTGAGGATGGGGTTTTGTCGGGGACCCACCCTTTTCTGTCTAGAATTTTCTGTCCCCTGTCCCTCTCAGTAG
CircID chr12:12625117|12625305
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MGDLGKGNIRVGKQGCKFSFWAVISGFSA
Nucleotide Sequence ATGGGTGATTTAGGAAAAGGCAACATTCGAGTGGGAAAACAGGGATGTAAGTTCTCATTTTGGGCCGTCATTTCAGGCTTTTCGGCTTGA
CircID chr12:12625117|12625305
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MSGTHPFLSRIFCPLSLSVGMEKKREIR
Nucleotide Sequence TTGTCGGGGACCCACCCTTTTCTGTCTAGAATTTTCTGTCCCCTGTCCCTCTCAGTAGGAATGGAGAAGAAGAGAGAAATCAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab