CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12908357|12908657
Strand -
CircType exon
Host Gene ENSG00000013588.5;
Algorism CIRI2;
Sequence AGCCGGGGTTGTGACCTCGGTGGCCTTCATGCTCACTCTCCCGATCCTCGTCTGCAAGGTGCAGGACTCCAACAGGCGAAAAATGCTGCCTACTCAGTTTCTCTTCCTCCTGGGTGTGTTGGGCATCTTTGGCCTCACCTTCGCCTTCATCATCGGACTGGACGGGAGCACAGGGCCCACACGCTTCTTCCTCTTTGGGATCCTCTTTTCCATCTGCTTCTCCTGCCTGCTGGCTCATGCTGTCAGTCTGACCAAGCTCGTCCGGGGGAGGAAGCCCCTTTCCCTGTTGGTGATTCTGGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12908357|12908657 hsa-miR-107 0 0 1
chr12:12908357|12908657 hsa-miR-214-5p 0 0 1
chr12:12908357|12908657 hsa-miR-214-3p 0 0 1
chr12:12908357|12908657 hsa-miR-583 0 1 1
chr12:12908357|12908657 hsa-miR-665 0 1 1
chr12:12908357|12908657 hsa-miR-940 0 0 1
chr12:12908357|12908657 hsa-miR-1291 0 1 1
chr12:12908357|12908657 hsa-miR-1247-5p 0 0 1
chr12:12908357|12908657 hsa-miR-1247-3p 0 0 1
chr12:12908357|12908657 hsa-miR-1272 0 1 1
chr12:12908357|12908657 hsa-miR-296-5p 0 0 1
chr12:12908357|12908657 hsa-miR-146b-3p 0 1 1
chr12:12908357|12908657 hsa-miR-1289 0 1 1
chr12:12908357|12908657 hsa-miR-516a-3p 0 0 1
chr12:12908357|12908657 hsa-miR-362-3p 0 0 1
chr12:12908357|12908657 hsa-miR-103 0 0 1
chr12:12908357|12908657 hsa-miR-329 0 0 1
chr12:12908357|12908657 hsa-miR-575 1 0 0
chr12:12908357|12908657 hsa-miR-611 1 0 0
chr12:12908357|12908657 hsa-miR-622 1 0 0
chr12:12908357|12908657 hsa-miR-623 1 0 0
chr12:12908357|12908657 hsa-miR-638 1 0 0
chr12:12908357|12908657 hsa-miR-765 1 0 0
chr12:12908357|12908657 hsa-miR-298 1 0 0
chr12:12908357|12908657 hsa-miR-3125 0 1 0
chr12:12908357|12908657 hsa-miR-3131 1 0 0
chr12:12908357|12908657 hsa-miR-3185 0 1 0
chr12:12908357|12908657 hsa-miR-4296 0 1 0
chr12:12908357|12908657 hsa-miR-4298 1 0 0
chr12:12908357|12908657 hsa-miR-4322 0 1 0
chr12:12908357|12908657 hsa-miR-4265 0 1 0
chr12:12908357|12908657 hsa-miR-4271 1 1 0
chr12:12908357|12908657 hsa-miR-3621 1 0 0
chr12:12908357|12908657 hsa-miR-3660 0 1 0
chr12:12908357|12908657 hsa-miR-3714 1 0 0
chr12:12908357|12908657 hsa-miR-3916 1 1 0
chr12:12908357|12908657 hsa-miR-3917 1 0 0
chr12:12908357|12908657 hsa-miR-3937 1 1 0
chr12:12908357|12908657 hsa-miR-4430 1 0 0
chr12:12908357|12908657 hsa-miR-4453 0 1 0
chr12:12908357|12908657 hsa-miR-4494 1 1 0
chr12:12908357|12908657 hsa-miR-4502 1 1 0
chr12:12908357|12908657 hsa-miR-2392 1 0 0
chr12:12908357|12908657 hsa-miR-4513 0 1 0
chr12:12908357|12908657 hsa-miR-4514 0 1 0
chr12:12908357|12908657 hsa-miR-4526 1 1 0
chr12:12908357|12908657 hsa-miR-4530 1 1 0
chr12:12908357|12908657 hsa-miR-4534 1 0 0
chr12:12908357|12908657 hsa-miR-4538 1 1 0
chr12:12908357|12908657 hsa-miR-4673 1 0 0
chr12:12908357|12908657 hsa-miR-4688 1 0 0
chr12:12908357|12908657 hsa-miR-4710 0 1 0
chr12:12908357|12908657 hsa-miR-4739 1 1 0
chr12:12908357|12908657 hsa-miR-4754 1 0 0
chr12:12908357|12908657 hsa-miR-5192 0 1 0
chr12:12908357|12908657 hsa-miR-5682 1 0 0
chr12:12908357|12908657 hsa-miR-5703 0 1 0
chr12:12908357|12908657 hsa-miR-6088 1 0 0
chr12:12908357|12908657 hsa-miR-6126 0 1 0
chr12:12908357|12908657 hsa-miR-6133 1 1 0
chr12:12908357|12908657 hsa-miR-6165 1 0 0
chr12:12908357|12908657 hsa-miR-7706 1 0 0
chr12:12908357|12908657 hsa-miR-8085 1 1 0
chr12:12908357|12908657 hsa-miR-12118 1 0 0
chr12:12908357|12908657 hsa-miR-4433b-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6749-3p 0 1 0
chr12:12908357|12908657 hsa-miR-500b-3p 0 1 0
chr12:12908357|12908657 hsa-miR-4433a-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6765-5p 1 0 0
chr12:12908357|12908657 hsa-miR-3150a-3p 1 0 0
chr12:12908357|12908657 hsa-miR-7106-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6894-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6510-5p 1 0 0
chr12:12908357|12908657 hsa-miR-766-5p 0 1 0
chr12:12908357|12908657 hsa-miR-4768-3p 1 1 0
chr12:12908357|12908657 hsa-miR-6807-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6880-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4695-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6746-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6727-5p 1 0 0
chr12:12908357|12908657 hsa-miR-3622b-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6806-5p 1 0 0
chr12:12908357|12908657 hsa-miR-3682-3p 1 0 0
chr12:12908357|12908657 hsa-miR-1292-5p 1 0 0
chr12:12908357|12908657 hsa-miR-3130-3p 0 1 0
chr12:12908357|12908657 hsa-miR-3194-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6786-5p 1 0 0
chr12:12908357|12908657 hsa-miR-7109-5p 1 0 0
chr12:12908357|12908657 hsa-miR-1226-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4640-5p 1 0 0
chr12:12908357|12908657 hsa-miR-885-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6771-5p 1 1 0
chr12:12908357|12908657 hsa-miR-4690-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6749-5p 1 0 0
chr12:12908357|12908657 hsa-miR-425-3p 1 0 0
chr12:12908357|12908657 hsa-miR-5584-5p 0 1 0
chr12:12908357|12908657 hsa-miR-4661-3p 0 1 0
chr12:12908357|12908657 hsa-miR-4778-3p 0 1 0
chr12:12908357|12908657 hsa-miR-1910-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6801-5p 0 1 0
chr12:12908357|12908657 hsa-miR-1914-5p 0 1 0
chr12:12908357|12908657 hsa-miR-5587-3p 0 1 0
chr12:12908357|12908657 hsa-miR-6838-3p 0 1 0
chr12:12908357|12908657 hsa-miR-3200-3p 1 0 0
chr12:12908357|12908657 hsa-miR-500a-3p 0 1 0
chr12:12908357|12908657 hsa-miR-1207-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4763-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6893-5p 1 1 0
chr12:12908357|12908657 hsa-miR-1343-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6743-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6752-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6756-5p 1 0 0
chr12:12908357|12908657 hsa-miR-1249-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6722-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6797-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6808-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6879-5p 1 0 0
chr12:12908357|12908657 hsa-miR-7111-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4728-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4649-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4726-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4745-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6729-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6883-5p 1 1 0
chr12:12908357|12908657 hsa-miR-3187-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4436b-3p 1 0 0
chr12:12908357|12908657 hsa-miR-4633-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6511b-5p 0 1 0
chr12:12908357|12908657 hsa-miR-3198 1 1 0
chr12:12908357|12908657 hsa-miR-6731-5p 0 1 0
chr12:12908357|12908657 hsa-miR-6758-5p 0 1 0
chr12:12908357|12908657 hsa-miR-6856-5p 1 0 0
chr12:12908357|12908657 hsa-miR-5008-3p 0 1 0
chr12:12908357|12908657 hsa-miR-10398-3p 1 0 0
chr12:12908357|12908657 hsa-miR-3679-5p 1 0 0
chr12:12908357|12908657 hsa-miR-4747-5p 0 1 0
chr12:12908357|12908657 hsa-miR-4716-3p 1 1 0
chr12:12908357|12908657 hsa-miR-6785-5p 1 1 0
chr12:12908357|12908657 hsa-miR-6724-5p 1 0 0
chr12:12908357|12908657 hsa-miR-6791-5p 1 0 0
chr12:12908357|12908657 hsa-miR-10400-3p 1 0 0
chr12:12908357|12908657 hsa-miR-6775-3p 0 1 0
chr12:12908357|12908657 hsa-miR-6859-5p 0 1 0
chr12:12908357|12908657 hsa-miR-3619-5p 1 1 0
chr12:12908357|12908657 hsa-miR-5195-3p 1 0 0
chr12:12908357|12908657 hsa-miR-370-5p 0 1 0
chr12:12908357|12908657 hsa-miR-7162-5p 0 1 0
chr12:12908357|12908657 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:12908357|12908657
ORF Type ORF1
Protein Length 83
Nucleotide Length 249
Protein Sequence MQGAGLQQAKNAAYSVSLPPGCVGHLWPHLRLHHRTGREHRAHTLLPLWDPLFHLLLLPAGSCCQSDQARPGEEAPFPVGDSG
Nucleotide Sequence CTGCAAGGTGCAGGACTCCAACAGGCGAAAAATGCTGCCTACTCAGTTTCTCTTCCTCCTGGGTGTGTTGGGCATCTTTGGCCTCACCTTCGCCTTCATCATCGGACTGGACGGGAGCACAGGGCCCACACGCTTCTTCCTCTTTGGGATCCTCTTTTCCATCTGCTTCTCCTGCCTGCTGGCTCATGCTGTCAGTCTGACCAAGCTCGTCCGGGGGAGGAAGCCCCTTTCCCTGTTGGTGATTCTGGG
CircID chr12:12908357|12908657
ORF Type ORF2
Protein Length 91
Nucleotide Length 273
Protein Sequence MLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILG
Nucleotide Sequence ATGCTCACTCTCCCGATCCTCGTCTGCAAGGTGCAGGACTCCAACAGGCGAAAAATGCTGCCTACTCAGTTTCTCTTCCTCCTGGGTGTGTTGGGCATCTTTGGCCTCACCTTCGCCTTCATCATCGGACTGGACGGGAGCACAGGGCCCACACGCTTCTTCCTCTTTGGGATCCTCTTTTCCATCTGCTTCTCCTGCCTGCTGGCTCATGCTGTCAGTCTGACCAAGCTCGTCCGGGGGAGGAAGCCCCTTTCCCTGTTGGTGATTCTGGGT
CircID chr12:12908357|12908657
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MASPSPSSSDWTGAQGPHASSSLGSSFPSASPACWLMLSV
Nucleotide Sequence TTGGCCTCACCTTCGCCTTCATCATCGGACTGGACGGGAGCACAGGGCCCACACGCTTCTTCCTCTTTGGGATCCTCTTTTCCATCTGCTTCTCCTGCCTGCTGGCTCATGCTGTCAGTCTGA
CircID chr12:12908357|12908657
ORF Type ORF4
Protein Length 79
Nucleotide Length 237
Protein Sequence MSQQAGEADGKEDPKEEEACGPCAPVQSDDEGEGEAKDAQHTQEEEKLSRQHFSPVGVLHLADEDRESEHEGHRGHNPG
Nucleotide Sequence ATGAGCCAGCAGGCAGGAGAAGCAGATGGAAAAGAGGATCCCAAAGAGGAAGAAGCGTGTGGGCCCTGTGCTCCCGTCCAGTCCGATGATGAAGGCGAAGGTGAGGCCAAAGATGCCCAACACACCCAGGAGGAAGAGAAACTGAGTAGGCAGCATTTTTCGCCTGTTGGAGTCCTGCACCTTGCAGACGAGGATCGGGAGAGTGAGCATGAAGGCCACCGAGGTCACAACCCCGGC
CircID chr12:12908357|12908657
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MEKRIPKRKKRVGPVLPSSPMMKAKVRPKMPNTPRRKRN
Nucleotide Sequence ATGGAAAAGAGGATCCCAAAGAGGAAGAAGCGTGTGGGCCCTGTGCTCCCGTCCAGTCCGATGATGAAGGCGAAGGTGAGGCCAAAGATGCCCAACACACCCAGGAGGAAGAGAAACTGA
CircID chr12:12908357|12908657
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MLESCTLQTRIGRVSMKATEVTTPA
Nucleotide Sequence CTGTTGGAGTCCTGCACCTTGCAGACGAGGATCGGGAGAGTGAGCATGAAGGCCACCGAGGTCACAACCCCGGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab