CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12914266|12914415
Strand +
CircType exon
Host Gene ENSG00000013588.5;
Algorism CIRI2;
Sequence CTCCTGGGAAAGACCAGAAGGATCTGTGTCACTATGTGTCCTTCCCCCTTTTCAGTACAAAGCCAGGCTAATCTTAGCGCGAAGCCTACCAACCAAACCTTTGCGGCATATAAACATCCCTAACTCAGCACATCATCCACTCACCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12914266|12914415 hsa-miR-596 0 0 1
chr12:12914266|12914415 hsa-miR-625-5p 0 0 1
chr12:12914266|12914415 hsa-miR-625-3p 0 0 1
chr12:12914266|12914415 hsa-miR-659-5p 0 0 1
chr12:12914266|12914415 hsa-miR-659-3p 0 0 1
chr12:12914266|12914415 hsa-miR-665 0 0 1
chr12:12914266|12914415 hsa-miR-1237-5p 0 0 1
chr12:12914266|12914415 hsa-miR-1237-3p 0 0 1
chr12:12914266|12914415 hsa-miR-1248 0 0 1
chr12:12914266|12914415 hsa-miR-1255a 0 0 1
chr12:12914266|12914415 hsa-miR-1197 0 0 1
chr12:12914266|12914415 hsa-miR-1255b 0 0 1
chr12:12914266|12914415 hsa-miR-1259 0 0 1
chr12:12914266|12914415 hsa-miR-762 1 0 0
chr12:12914266|12914415 hsa-miR-765 1 0 0
chr12:12914266|12914415 hsa-miR-1275 1 0 0
chr12:12914266|12914415 hsa-miR-1322 1 0 0
chr12:12914266|12914415 hsa-miR-3165 1 0 0
chr12:12914266|12914415 hsa-miR-3175 1 0 0
chr12:12914266|12914415 hsa-miR-4481 1 0 0
chr12:12914266|12914415 hsa-miR-4506 1 0 0
chr12:12914266|12914415 hsa-miR-4516 1 0 0
chr12:12914266|12914415 hsa-miR-4525 1 0 0
chr12:12914266|12914415 hsa-miR-4656 1 0 0
chr12:12914266|12914415 hsa-miR-4739 1 0 0
chr12:12914266|12914415 hsa-miR-5192 1 0 0
chr12:12914266|12914415 hsa-miR-5572 1 0 0
chr12:12914266|12914415 hsa-miR-5698 1 0 0
chr12:12914266|12914415 hsa-miR-6124 1 0 0
chr12:12914266|12914415 hsa-miR-6134 1 0 0
chr12:12914266|12914415 hsa-miR-6745 1 0 0
chr12:12914266|12914415 hsa-miR-8077 1 0 0
chr12:12914266|12914415 hsa-miR-12115 1 0 0
chr12:12914266|12914415 hsa-miR-12129 1 0 0
chr12:12914266|12914415 hsa-miR-29b-1-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6734-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6894-5p 1 0 0
chr12:12914266|12914415 hsa-miR-125a-3p 1 0 0
chr12:12914266|12914415 hsa-miR-6799-5p 1 0 0
chr12:12914266|12914415 hsa-miR-5187-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6515-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7160-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6741-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6759-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6748-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6732-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6798-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7109-5p 1 0 0
chr12:12914266|12914415 hsa-miR-3691-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7854-3p 1 0 0
chr12:12914266|12914415 hsa-miR-4787-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6717-5p 1 0 0
chr12:12914266|12914415 hsa-miR-574-5p 1 0 0
chr12:12914266|12914415 hsa-miR-3681-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6769b-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6778-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6812-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6870-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6752-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6769a-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6803-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6851-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7107-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7110-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6751-5p 1 0 0
chr12:12914266|12914415 hsa-miR-7111-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6780b-5p 1 0 0
chr12:12914266|12914415 hsa-miR-328-5p 1 0 0
chr12:12914266|12914415 hsa-miR-4701-3p 1 0 0
chr12:12914266|12914415 hsa-miR-4745-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6795-5p 1 0 0
chr12:12914266|12914415 hsa-miR-1238-5p 1 0 0
chr12:12914266|12914415 hsa-miR-4758-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6736-5p 1 0 0
chr12:12914266|12914415 hsa-miR-4747-5p 1 0 0
chr12:12914266|12914415 hsa-miR-4716-3p 1 0 0
chr12:12914266|12914415 hsa-miR-6790-5p 1 0 0
chr12:12914266|12914415 hsa-miR-6849-5p 1 0 0
chr12:12914266|12914415 hsa-miR-363-5p 1 0 0
chr12:12914266|12914415 hsa-miR-1255b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:12914266|12914415
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MGKTRRICVTMCPSPFSVQSQANLSAKPTNQTFAAYKHP
Nucleotide Sequence CTGGGAAAGACCAGAAGGATCTGTGTCACTATGTGTCCTTCCCCCTTTTCAGTACAAAGCCAGGCTAATCTTAGCGCGAAGCCTACCAACCAAACCTTTGCGGCATATAAACATCCCTAA
CircID chr12:12914266|12914415
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MVGFALRLAWLCTEKGEGHIVTQILLVFPR
Nucleotide Sequence TTGGTAGGCTTCGCGCTAAGATTAGCCTGGCTTTGTACTGAAAAGGGGGAAGGACACATAGTGACACAGATCCTTCTGGTCTTTCCCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab