CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12915707|12915978
Strand +
CircType exon
Host Gene ENSG00000013588.5;
Algorism CIRI2;
Sequence CTGAAGATGAGTTAACAGCCGCAGCAGTGGGAGGAGGGGTGACAGGTACTGCTCAAATGAGCAGCAACCTTCTGCCACCTGGCAAGAACAGGCGTTCAGTGCAGGGCTGGCCTGCCCCTGCAGGCTTCAGAGACCACTGCGTTTCTTAGAAGGGAAACAACGGGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTCAGAGGCCACGGTATCCCAGCACTTTCAGAGGCCAAGGTAGGTGGATCACGAGGTTTGGAGTTCGAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12915707|12915978 hsa-miR-17-5p 0 0 1
chr12:12915707|12915978 hsa-miR-17-3p 0 0 1
chr12:12915707|12915978 hsa-miR-20a-5p 0 0 1
chr12:12915707|12915978 hsa-miR-20a-3p 0 0 1
chr12:12915707|12915978 hsa-miR-93-5p 0 0 1
chr12:12915707|12915978 hsa-miR-93-3p 0 0 1
chr12:12915707|12915978 hsa-miR-106a-5p 0 0 1
chr12:12915707|12915978 hsa-miR-106a-3p 0 0 1
chr12:12915707|12915978 hsa-miR-204-5p 0 0 1
chr12:12915707|12915978 hsa-miR-204-3p 0 0 1
chr12:12915707|12915978 hsa-miR-211-5p 0 0 1
chr12:12915707|12915978 hsa-miR-211-3p 0 0 1
chr12:12915707|12915978 hsa-miR-106b-5p 0 0 1
chr12:12915707|12915978 hsa-miR-106b-3p 0 0 1
chr12:12915707|12915978 hsa-miR-302a-5p 0 0 1
chr12:12915707|12915978 hsa-miR-302a-3p 0 0 1
chr12:12915707|12915978 hsa-miR-302b-5p 0 0 1
chr12:12915707|12915978 hsa-miR-302b-3p 0 0 1
chr12:12915707|12915978 hsa-miR-302c-5p 0 0 1
chr12:12915707|12915978 hsa-miR-302c-3p 0 0 1
chr12:12915707|12915978 hsa-miR-302d-5p 0 0 1
chr12:12915707|12915978 hsa-miR-302d-3p 0 0 1
chr12:12915707|12915978 hsa-miR-372-5p 0 0 1
chr12:12915707|12915978 hsa-miR-372-3p 0 0 1
chr12:12915707|12915978 hsa-miR-373-5p 0 0 1
chr12:12915707|12915978 hsa-miR-373-3p 0 0 1
chr12:12915707|12915978 hsa-miR-20b-5p 0 0 1
chr12:12915707|12915978 hsa-miR-20b-3p 0 0 1
chr12:12915707|12915978 hsa-miR-520e-5p 0 0 1
chr12:12915707|12915978 hsa-miR-520e-3p 0 0 1
chr12:12915707|12915978 hsa-miR-520b-5p 0 0 1
chr12:12915707|12915978 hsa-miR-520b-3p 0 0 1
chr12:12915707|12915978 hsa-miR-519d-5p 0 0 1
chr12:12915707|12915978 hsa-miR-519d-3p 0 0 1
chr12:12915707|12915978 hsa-miR-579-5p 0 0 1
chr12:12915707|12915978 hsa-miR-579-3p 0 0 1
chr12:12915707|12915978 hsa-miR-593-5p 0 0 1
chr12:12915707|12915978 hsa-miR-593-3p 0 0 1
chr12:12915707|12915978 hsa-miR-596 0 0 1
chr12:12915707|12915978 hsa-miR-614 1 1 1
chr12:12915707|12915978 hsa-miR-623 0 0 1
chr12:12915707|12915978 hsa-miR-640 1 1 1
chr12:12915707|12915978 hsa-miR-298 0 0 1
chr12:12915707|12915978 hsa-miR-1202 0 0 1
chr12:12915707|12915978 hsa-miR-1204 0 0 1
chr12:12915707|12915978 hsa-miR-1205 0 0 1
chr12:12915707|12915978 hsa-miR-302e 0 0 1
chr12:12915707|12915978 hsa-miR-512-3p 0 1 1
chr12:12915707|12915978 hsa-miR-486-3p 0 1 1
chr12:12915707|12915978 hsa-miR-532-3p 0 1 1
chr12:12915707|12915978 hsa-miR-767-3p 0 0 1
chr12:12915707|12915978 hsa-miR-520d-3p 0 0 1
chr12:12915707|12915978 hsa-miR-520a-3p 0 0 1
chr12:12915707|12915978 hsa-miR-520c-3p 0 0 1
chr12:12915707|12915978 hsa-miR-600 0 1 0
chr12:12915707|12915978 hsa-miR-638 1 0 0
chr12:12915707|12915978 hsa-miR-639 1 0 0
chr12:12915707|12915978 hsa-miR-762 1 0 0
chr12:12915707|12915978 hsa-miR-663b 1 0 0
chr12:12915707|12915978 hsa-miR-1291 1 1 0
chr12:12915707|12915978 hsa-miR-2278 0 1 0
chr12:12915707|12915978 hsa-miR-3159 0 1 0
chr12:12915707|12915978 hsa-miR-4425 0 1 0
chr12:12915707|12915978 hsa-miR-4654 0 1 0
chr12:12915707|12915978 hsa-miR-4688 0 1 0
chr12:12915707|12915978 hsa-miR-11400 0 1 0
chr12:12915707|12915978 hsa-miR-12120 0 1 0
chr12:12915707|12915978 hsa-miR-6749-3p 1 1 0
chr12:12915707|12915978 hsa-miR-132-5p 0 1 0
chr12:12915707|12915978 hsa-miR-4731-5p 1 0 0
chr12:12915707|12915978 hsa-miR-668-3p 0 1 0
chr12:12915707|12915978 hsa-miR-6747-3p 1 0 0
chr12:12915707|12915978 hsa-miR-6879-3p 0 1 0
chr12:12915707|12915978 hsa-miR-671-5p 0 1 0
chr12:12915707|12915978 hsa-miR-212-5p 0 1 0
chr12:12915707|12915978 hsa-miR-1972 0 1 0
chr12:12915707|12915978 hsa-miR-486-5p 1 1 0
chr12:12915707|12915978 hsa-miR-6089 1 0 0
chr12:12915707|12915978 hsa-miR-874-5p 1 0 0
chr12:12915707|12915978 hsa-miR-7108-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6793-5p 1 0 0
chr12:12915707|12915978 hsa-miR-4793-3p 0 1 0
chr12:12915707|12915978 hsa-miR-5006-5p 0 1 0
chr12:12915707|12915978 hsa-miR-1247-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6514-3p 0 1 0
chr12:12915707|12915978 hsa-miR-3677-3p 1 0 0
chr12:12915707|12915978 hsa-miR-1266-3p 0 1 0
chr12:12915707|12915978 hsa-miR-7112-5p 1 0 0
chr12:12915707|12915978 hsa-miR-1250-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6813-3p 0 1 0
chr12:12915707|12915978 hsa-miR-6773-3p 1 1 0
chr12:12915707|12915978 hsa-miR-6770-3p 1 0 0
chr12:12915707|12915978 hsa-miR-1292-3p 0 1 0
chr12:12915707|12915978 hsa-miR-6761-5p 0 1 0
chr12:12915707|12915978 hsa-miR-6802-3p 0 1 0
chr12:12915707|12915978 hsa-miR-4763-3p 1 0 0
chr12:12915707|12915978 hsa-miR-6787-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6816-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6865-5p 0 1 0
chr12:12915707|12915978 hsa-miR-6743-5p 1 1 0
chr12:12915707|12915978 hsa-miR-6722-3p 1 1 0
chr12:12915707|12915978 hsa-miR-6754-3p 1 0 0
chr12:12915707|12915978 hsa-miR-1909-3p 0 1 0
chr12:12915707|12915978 hsa-miR-4749-5p 1 0 0
chr12:12915707|12915978 hsa-miR-6799-3p 0 1 0
chr12:12915707|12915978 hsa-miR-6877-3p 1 0 0
chr12:12915707|12915978 hsa-miR-324-3p 0 1 0
chr12:12915707|12915978 hsa-miR-4757-5p 1 1 0
chr12:12915707|12915978 hsa-miR-6775-3p 1 0 0
chr12:12915707|12915978 hsa-miR-10392-3p 1 0 0
chr12:12915707|12915978 hsa-miR-3150b-5p 0 1 0
chr12:12915707|12915978 hsa-miR-10394-5p 0 1 0
chr12:12915707|12915978 hsa-miR-6848-3p 0 1 0
chr12:12915707|12915978 hsa-miR-619-5p 1 1 0
chr12:12915707|12915978 hsa-miR-6843-3p 0 1 0
chr12:12915707|12915978 hsa-miR-3150a-5p 0 1 0
chr12:12915707|12915978 hsa-miR-3145-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:12915707|12915978
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MARTGVQCRAGLPLQASETTAFLRRETTGPGAVAHACNPSTFRGHGIPALSEAKVGGSRGLEFE
Nucleotide Sequence CTGGCAAGAACAGGCGTTCAGTGCAGGGCTGGCCTGCCCCTGCAGGCTTCAGAGACCACTGCGTTTCTTAGAAGGGAAACAACGGGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTCAGAGGCCACGGTATCCCAGCACTTTCAGAGGCCAAGGTAGGTGGATCACGAGGTTTGGAGTTCGAG
CircID chr12:12915707|12915978
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MACPCRLQRPLRFLEGKQRGRARWLMPVIPALSEATVSQHFQRPR
Nucleotide Sequence CTGGCCTGCCCCTGCAGGCTTCAGAGACCACTGCGTTTCTTAGAAGGGAAACAACGGGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTCAGAGGCCACGGTATCCCAGCACTTTCAGAGGCCAAGGTAG
CircID chr12:12915707|12915978
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MSSNLLPPGKNRRSVQGWPAPAGFRDHCVS
Nucleotide Sequence ATGAGCAGCAACCTTCTGCCACCTGGCAAGAACAGGCGTTCAGTGCAGGGCTGGCCTGCCCCTGCAGGCTTCAGAGACCACTGCGTTTCTTAG
CircID chr12:12915707|12915978
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MKPAGAGQPCTERLFLPGGRRLLLI
Nucleotide Sequence CTGAAGCCTGCAGGGGCAGGCCAGCCCTGCACTGAACGCCTGTTCTTGCCAGGTGGCAGAAGGTTGCTGCTCATTTGA
CircID chr12:12915707|12915978
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MQGQASPALNACSCQVAEGCCSFEQYLSPLLPLLRLLTHLQ
Nucleotide Sequence CTGCAGGGGCAGGCCAGCCCTGCACTGAACGCCTGTTCTTGCCAGGTGGCAGAAGGTTGCTGCTCATTTGAGCAGTACCTGTCACCCCTCCTCCCACTGCTGCGGCTGTTAACTCATCTTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab