CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12916709|12916967
Strand +
CircType exon
Host Gene ENSG00000013588.5;
Algorism CIRI2;
Sequence GGTGGCAAACCTGCAGACCCTGGCAGCAAGATGAGGGCAAGGAAGGGAAAGGTCAGCTGGGCACAGTCCAGTTCTCAGCAGTAATGACAGAAATGAAGGAAGGAAGCTCAGAATGAGTGCACGGGGGAAATGGGTTTTGCTGATGCATTTCCAGGGCCGGCCGTACTCTTTGTTTTGGCACACTTTTCCTGACAAACAGCCAGTGTTCTCAACACATAAATACTAGTCCACGTTAACAACAATAGCATATGAGACCGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12916709|12916967 hsa-miR-204-5p 0 0 1
chr12:12916709|12916967 hsa-miR-204-3p 0 0 1
chr12:12916709|12916967 hsa-miR-205-5p 0 0 1
chr12:12916709|12916967 hsa-miR-205-3p 0 0 1
chr12:12916709|12916967 hsa-miR-211-5p 0 0 1
chr12:12916709|12916967 hsa-miR-211-3p 0 0 1
chr12:12916709|12916967 hsa-miR-141-5p 0 0 1
chr12:12916709|12916967 hsa-miR-141-3p 0 0 1
chr12:12916709|12916967 hsa-miR-146a-5p 0 0 1
chr12:12916709|12916967 hsa-miR-146a-3p 0 0 1
chr12:12916709|12916967 hsa-miR-200a-5p 0 0 1
chr12:12916709|12916967 hsa-miR-200a-3p 0 0 1
chr12:12916709|12916967 hsa-miR-422a 0 0 1
chr12:12916709|12916967 hsa-miR-545-5p 0 0 1
chr12:12916709|12916967 hsa-miR-545-3p 0 0 1
chr12:12916709|12916967 hsa-miR-579-5p 0 0 1
chr12:12916709|12916967 hsa-miR-579-3p 0 0 1
chr12:12916709|12916967 hsa-miR-580-5p 0 0 1
chr12:12916709|12916967 hsa-miR-580-3p 0 0 1
chr12:12916709|12916967 hsa-miR-589-5p 0 0 1
chr12:12916709|12916967 hsa-miR-589-3p 0 0 1
chr12:12916709|12916967 hsa-miR-595 0 1 1
chr12:12916709|12916967 hsa-miR-616-5p 0 0 1
chr12:12916709|12916967 hsa-miR-616-3p 0 0 1
chr12:12916709|12916967 hsa-miR-623 1 0 1
chr12:12916709|12916967 hsa-miR-648 0 0 1
chr12:12916709|12916967 hsa-miR-657 0 0 1
chr12:12916709|12916967 hsa-miR-660-5p 0 0 1
chr12:12916709|12916967 hsa-miR-660-3p 0 0 1
chr12:12916709|12916967 hsa-miR-874-5p 0 0 1
chr12:12916709|12916967 hsa-miR-874-3p 0 0 1
chr12:12916709|12916967 hsa-miR-892b 0 1 1
chr12:12916709|12916967 hsa-miR-873-5p 0 0 1
chr12:12916709|12916967 hsa-miR-873-3p 0 0 1
chr12:12916709|12916967 hsa-miR-1182 0 0 1
chr12:12916709|12916967 hsa-miR-1227-5p 0 0 1
chr12:12916709|12916967 hsa-miR-1227-3p 0 0 1
chr12:12916709|12916967 hsa-miR-1205 0 1 1
chr12:12916709|12916967 hsa-miR-1291 0 1 1
chr12:12916709|12916967 hsa-miR-548p 0 0 1
chr12:12916709|12916967 hsa-miR-1288-5p 0 0 1
chr12:12916709|12916967 hsa-miR-1288-3p 0 0 1
chr12:12916709|12916967 hsa-miR-1184 0 0 1
chr12:12916709|12916967 hsa-miR-502-5p 1 1 1
chr12:12916709|12916967 hsa-miR-875-3p 0 0 1
chr12:12916709|12916967 hsa-miR-146b-5p 0 1 1
chr12:12916709|12916967 hsa-miR-516a-3p 0 0 1
chr12:12916709|12916967 hsa-miR-378 0 0 1
chr12:12916709|12916967 hsa-miR-1269 0 0 1
chr12:12916709|12916967 hsa-miR-1300 0 0 1
chr12:12916709|12916967 hsa-miR-326 1 0 0
chr12:12916709|12916967 hsa-miR-933 1 0 0
chr12:12916709|12916967 hsa-miR-1269a 0 1 0
chr12:12916709|12916967 hsa-miR-3169 1 0 0
chr12:12916709|12916967 hsa-miR-378h 0 1 0
chr12:12916709|12916967 hsa-miR-4491 1 1 0
chr12:12916709|12916967 hsa-miR-4515 1 1 0
chr12:12916709|12916967 hsa-miR-1269b 0 1 0
chr12:12916709|12916967 hsa-miR-4675 1 0 0
chr12:12916709|12916967 hsa-miR-6069 1 0 0
chr12:12916709|12916967 hsa-miR-6072 0 1 0
chr12:12916709|12916967 hsa-miR-7703 0 1 0
chr12:12916709|12916967 hsa-miR-12132 0 1 0
chr12:12916709|12916967 hsa-miR-153-5p 0 1 0
chr12:12916709|12916967 hsa-miR-93-3p 0 1 0
chr12:12916709|12916967 hsa-miR-4687-3p 1 1 0
chr12:12916709|12916967 hsa-miR-3064-5p 1 1 0
chr12:12916709|12916967 hsa-miR-7160-5p 1 1 0
chr12:12916709|12916967 hsa-miR-6787-3p 1 0 0
chr12:12916709|12916967 hsa-miR-1915-5p 1 1 0
chr12:12916709|12916967 hsa-miR-4711-5p 0 1 0
chr12:12916709|12916967 hsa-miR-4655-3p 1 0 0
chr12:12916709|12916967 hsa-miR-5006-5p 0 1 0
chr12:12916709|12916967 hsa-miR-7161-3p 1 0 0
chr12:12916709|12916967 hsa-miR-3679-3p 0 1 0
chr12:12916709|12916967 hsa-miR-3667-3p 1 1 0
chr12:12916709|12916967 hsa-miR-6823-5p 1 0 0
chr12:12916709|12916967 hsa-miR-6501-5p 1 1 0
chr12:12916709|12916967 hsa-miR-4638-3p 1 0 0
chr12:12916709|12916967 hsa-miR-4446-5p 0 1 0
chr12:12916709|12916967 hsa-miR-146b-3p 1 1 0
chr12:12916709|12916967 hsa-miR-1236-3p 1 0 0
chr12:12916709|12916967 hsa-miR-6889-3p 1 1 0
chr12:12916709|12916967 hsa-miR-3158-3p 1 0 0
chr12:12916709|12916967 hsa-miR-6758-3p 0 1 0
chr12:12916709|12916967 hsa-miR-1914-5p 1 1 0
chr12:12916709|12916967 hsa-miR-5088-3p 1 0 0
chr12:12916709|12916967 hsa-miR-6759-3p 1 1 0
chr12:12916709|12916967 hsa-miR-3617-3p 0 1 0
chr12:12916709|12916967 hsa-miR-6722-3p 1 0 0
chr12:12916709|12916967 hsa-miR-4685-3p 1 1 0
chr12:12916709|12916967 hsa-miR-4755-5p 1 1 0
chr12:12916709|12916967 hsa-miR-3620-5p 1 1 0
chr12:12916709|12916967 hsa-miR-6756-3p 1 0 0
chr12:12916709|12916967 hsa-miR-3059-5p 1 0 0
chr12:12916709|12916967 hsa-miR-6529-3p 0 1 0
chr12:12916709|12916967 hsa-miR-6891-3p 0 1 0
chr12:12916709|12916967 hsa-miR-10397-5p 1 0 0
chr12:12916709|12916967 hsa-miR-6504-5p 0 1 0
chr12:12916709|12916967 hsa-miR-7162-5p 0 1 0
chr12:12916709|12916967 hsa-miR-7153-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:12916709|12916967
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MSARGKWVLLMHFQGRPYSLFWHTFPDKQPVFSTHKY
Nucleotide Sequence ATGAGTGCACGGGGGAAATGGGTTTTGCTGATGCATTTCCAGGGCCGGCCGTACTCTTTGTTTTGGCACACTTTTCCTGACAAACAGCCAGTGTTCTCAACACATAAATACTAG
CircID chr12:12916709|12916967
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MFVRKSVPKQRVRPALEMHQQNPFPPCTHSELPSFISVITAENWTVPS
Nucleotide Sequence CTGTTTGTCAGGAAAAGTGTGCCAAAACAAAGAGTACGGCCGGCCCTGGAAATGCATCAGCAAAACCCATTTCCCCCGTGCACTCATTCTGAGCTTCCTTCCTTCATTTCTGTCATTACTGCTGAGAACTGGACTGTGCCCAGCTGA
CircID chr12:12916709|12916967
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MSGKVCQNKEYGRPWKCISKTHFPRALILSFLPSFLSLLLRTGLCPADLSLPCPHLAARVCRFAT
Nucleotide Sequence TTGTCAGGAAAAGTGTGCCAAAACAAAGAGTACGGCCGGCCCTGGAAATGCATCAGCAAAACCCATTTCCCCCGTGCACTCATTCTGAGCTTCCTTCCTTCATTTCTGTCATTACTGCTGAGAACTGGACTGTGCCCAGCTGACCTTTCCCTTCCTTGCCCTCATCTTGCTGCCAGGGTCTGCAGGTTTGCCACC
CircID chr12:12916709|12916967
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MLLLLTWTSIYVLRTLAVCQEKCAKTKSTAGPGNASAKPISPVHSF
Nucleotide Sequence ATGCTATTGTTGTTAACGTGGACTAGTATTTATGTGTTGAGAACACTGGCTGTTTGTCAGGAAAAGTGTGCCAAAACAAAGAGTACGGCCGGCCCTGGAAATGCATCAGCAAAACCCATTTCCCCCGTGCACTCATTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab