CircRNA Information

General Information
circRNA Basic Information
CircID chr12:12917012|12917237
Strand +
CircType exon
Host Gene ENSG00000013588.5;
Algorism CIRI2;
Sequence ACACACACACACACACACACACACAGATCCAGCAGCATCCTTGGAACATCCTGAAGTCAAGAAAGGCACAGCACTGTCTGCCCCGATAGAAGGAATTCCAGAAAACAGCCACGAGGTTGGGCCACAGAATTTCCAAAGAGAGCAATCTACAAACTGGGGGTTGATTTCCCAGTTCCTGGATCTCAGCAGTCAACACACGAGAAGGATTTTTTTCTGAAGCTGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:12917012|12917237 hsa-miR-526b-5p 0 0 1
chr12:12917012|12917237 hsa-miR-526b-3p 0 0 1
chr12:12917012|12917237 hsa-miR-578 0 0 1
chr12:12917012|12917237 hsa-miR-617 0 0 1
chr12:12917012|12917237 hsa-miR-665 0 0 1
chr12:12917012|12917237 hsa-miR-873-5p 0 0 1
chr12:12917012|12917237 hsa-miR-873-3p 0 0 1
chr12:12917012|12917237 hsa-miR-943 0 0 1
chr12:12917012|12917237 hsa-miR-1237-5p 0 0 1
chr12:12917012|12917237 hsa-miR-1237-3p 0 0 1
chr12:12917012|12917237 hsa-miR-663b 1 1 1
chr12:12917012|12917237 hsa-miR-1204 0 0 1
chr12:12917012|12917237 hsa-miR-1287-5p 0 0 1
chr12:12917012|12917237 hsa-miR-1287-3p 0 0 1
chr12:12917012|12917237 hsa-miR-1299 1 1 1
chr12:12917012|12917237 hsa-miR-1248 0 0 1
chr12:12917012|12917237 hsa-miR-1265 0 1 1
chr12:12917012|12917237 hsa-miR-1324 0 1 1
chr12:12917012|12917237 hsa-miR-512-3p 0 0 1
chr12:12917012|12917237 hsa-miR-486-3p 1 1 1
chr12:12917012|12917237 hsa-miR-885-3p 0 0 1
chr12:12917012|12917237 hsa-miR-361-3p 0 1 1
chr12:12917012|12917237 hsa-miR-875-3p 0 0 1
chr12:12917012|12917237 hsa-miR-548c-3p 0 0 1
chr12:12917012|12917237 hsa-miR-550 0 0 1
chr12:12917012|12917237 hsa-miR-9 0 0 1
chr12:12917012|12917237 hsa-miR-500 0 0 1
chr12:12917012|12917237 hsa-miR-516b 0 0 1
chr12:12917012|12917237 hsa-miR-297 1 0 0
chr12:12917012|12917237 hsa-miR-1231 1 0 0
chr12:12917012|12917237 hsa-miR-1322 1 0 0
chr12:12917012|12917237 hsa-miR-3166 0 1 0
chr12:12917012|12917237 hsa-miR-3196 1 0 0
chr12:12917012|12917237 hsa-miR-4455 1 0 0
chr12:12917012|12917237 hsa-miR-3135b 1 0 0
chr12:12917012|12917237 hsa-miR-4488 1 0 0
chr12:12917012|12917237 hsa-miR-4498 1 0 0
chr12:12917012|12917237 hsa-miR-4688 1 0 0
chr12:12917012|12917237 hsa-miR-5090 1 1 0
chr12:12917012|12917237 hsa-miR-6860 1 0 0
chr12:12917012|12917237 hsa-miR-370-3p 1 0 0
chr12:12917012|12917237 hsa-miR-93-3p 0 1 0
chr12:12917012|12917237 hsa-miR-4687-3p 1 0 0
chr12:12917012|12917237 hsa-miR-3692-5p 1 1 0
chr12:12917012|12917237 hsa-miR-3064-5p 1 0 0
chr12:12917012|12917237 hsa-miR-7160-5p 0 1 0
chr12:12917012|12917237 hsa-miR-6741-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6727-5p 1 1 0
chr12:12917012|12917237 hsa-miR-197-5p 1 1 0
chr12:12917012|12917237 hsa-miR-5589-5p 1 0 0
chr12:12917012|12917237 hsa-miR-3180-3p 1 0 0
chr12:12917012|12917237 hsa-miR-6868-3p 0 1 0
chr12:12917012|12917237 hsa-miR-6829-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6835-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6772-3p 1 0 0
chr12:12917012|12917237 hsa-miR-204-3p 0 1 0
chr12:12917012|12917237 hsa-miR-4713-3p 0 1 0
chr12:12917012|12917237 hsa-miR-3925-3p 0 1 0
chr12:12917012|12917237 hsa-miR-574-5p 1 1 0
chr12:12917012|12917237 hsa-miR-597-3p 1 0 0
chr12:12917012|12917237 hsa-miR-4668-3p 0 1 0
chr12:12917012|12917237 hsa-miR-6816-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6870-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6775-5p 1 0 0
chr12:12917012|12917237 hsa-miR-3180 1 0 0
chr12:12917012|12917237 hsa-miR-6726-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6743-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6795-5p 1 0 0
chr12:12917012|12917237 hsa-miR-6529-3p 1 1 0
chr12:12917012|12917237 hsa-miR-3150b-5p 0 1 0
chr12:12917012|12917237 hsa-miR-92b-3p 1 0 0
chr12:12917012|12917237 hsa-miR-3136-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:12917012|12917237
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MEHPEVKKGTALSAPIEGIPENSHEVGPQNFQREQSTNWGLISQFLDLSSQHTRRIFF
Nucleotide Sequence TTGGAACATCCTGAAGTCAAGAAAGGCACAGCACTGTCTGCCCCGATAGAAGGAATTCCAGAAAACAGCCACGAGGTTGGGCCACAGAATTTCCAAAGAGAGCAATCTACAAACTGGGGGTTGATTTCCCAGTTCCTGGATCTCAGCAGTCAACACACGAGAAGGATTTTTTTCTGA
CircID chr12:12917012|12917237
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MTAEIQELGNQPPVCRLLSLEILWPNLVAVFWNSFYRGRQCCAFLDFRMFQGCCWICVCVCVCV
Nucleotide Sequence TTGACTGCTGAGATCCAGGAACTGGGAAATCAACCCCCAGTTTGTAGATTGCTCTCTTTGGAAATTCTGTGGCCCAACCTCGTGGCTGTTTTCTGGAATTCCTTCTATCGGGGCAGACAGTGCTGTGCCTTTCTTGACTTCAGGATGTTCCAAGGATGCTGCTGGATCTGTGTGTGTGTGTGTGTGTGTGTG
CircID chr12:12917012|12917237
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MLRSRNWEINPQFVDCSLWKFCGPTSWLFSGIPSIGADSAVPFLTSGCSKDAAGSVCVCVCVC
Nucleotide Sequence CTGCTGAGATCCAGGAACTGGGAAATCAACCCCCAGTTTGTAGATTGCTCTCTTTGGAAATTCTGTGGCCCAACCTCGTGGCTGTTTTCTGGAATTCCTTCTATCGGGGCAGACAGTGCTGTGCCTTTCTTGACTTCAGGATGTTCCAAGGATGCTGCTGGATCTGTGTGTGTGTGTGTGTGTGTGTGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab