CircRNA Information

General Information
circRNA Basic Information
CircID chr12:14423909|14425473
Strand +
CircType exon
Host Gene ENSG00000171681.12;
Algorism find_circ;CIRI2;DCC;
Sequence ATTCAGAATGGACAGTTTAGAAGAACCTCAGAAAAAAGTCTTTAAGGCTCGAAAAACGATGAGAGTGAGTGATCGTCAGCAACTTGAAGCAGTGTACAAGGTCAAAGAAGAACTGTTGAAAACTGATGTCAAGCTGTTAAATGGCAACCATGAAAATGGAGATTTGGACCCAACCTCACCTTTGGAAAACATGGATTACATTAAAGACAAGGAAGAGGTGAATGGCATTGAAGAGATTTGTTTTGATCCTGAAGGAAGTAAAGCAGAATGGAAGGAAACACCCTGTATCCTAAGTGTTAATGTAAAAAACAAGCAGGATGATGATTTAAATTGTGAACCTTTGTCTCCCCATAATATAACTCCAGAACCAGTCTCTAAACTGCCTGCTGAACCAGTTTCTGGTGATCCAGCCCCTGGTGATCTGGATGCCGGAGATCCAGCCTCCGGAGTACTGGCCTCTGGTGATTCCACCTCTGGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAACCTCTGGTGATGCCCCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCTCCTCTGGTGATCCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGTGCCGCTGATGATATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCACTGATCCAGCCTCTGATGATCTGGCCTCTGGTGATCTATCCTCTAGTGAACTGGCCTCTGATGATCTGGCCACTGGTGAACTGGCCTCTGATGAGCTGACTTCTGAATCAACCTTTGATCGTACCTTTGAACCAAAGTCTGTACCAGTTTGTGAACCAGTTCCTGAAATTGACAATATAGAACCAAGTAGCAATAAAGATGATGATTTTCTTGAAAAAAATGGAGCTGATGAAAAATTAGAGCAAATTCAGAGTAAAGACTCATTGGATGAGAAAAATAAAGCTGATAATAATATTGATGCTAATGAAGAAACTCTAGAAACAGATGATACAACTATTTGTTCAGATCGACCTCCTGAAAATGAAAAGAAGGTAGAGGAAGATATTATCACAGAGCTTGCTCTTGGAGAAGATGCTATATCTAGCAGTATGGAAATTGACCAAGGTGAAAAGAATGAAGATGAAACTTCTGCAGATCTTGTAGAAACGATTAATGAAAATGTTATTGAAGATAACAAAAGTGAGAATATCTTAGAAAATACAGACTCTATGGAGACAGATGAAATCATTCCTATTTTGGAAAAGCTTGCACCTTCTGAGGATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCCAATCGATGAGACAAATCCAGATTTGGAAGAGAAAATGGAAAGTTCTTTTGGTTCACCATCTAAACAAGAAAGTAGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCTCTGATGAAGAGGATATTTCGGGTGAAAAAGATGAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:14423909|14425473
ORF Type ORF1
Protein Length 519
Nucleotide Length 1557
Protein Sequence MDSLEEPQKKVFKARKTMRVSDRQQLEAVYKVKEELLKTDVKLLNGNHENGDLDPTSPLENMDYIKDKEEVNGIEEICFDPEGSKAEWKETPCILSVNVKNKQDDDLNCEPLSPHNITPEPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDVSPGDATSGDATADDLSSGDPTSSDPIPGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATGELASDELTSESTFDRTFEPKSVPVCEPVPEIDNIEPSSNKDDDFLEKNGADEKLEQIQSKDSLDEKNKADNNIDANEETLETDDTTICSDRPPENEKKVEEDIITELALGEDAISSSMEIDQGEKNEDETSADLVETINENVIEDNKSENILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLLPIDETNPDLEEKMESSFGSPSKQESSESLPKEAFLVLSDEEDISGEKDESEVISQNETCSP
Nucleotide Sequence ATGGACAGTTTAGAAGAACCTCAGAAAAAAGTCTTTAAGGCTCGAAAAACGATGAGAGTGAGTGATCGTCAGCAACTTGAAGCAGTGTACAAGGTCAAAGAAGAACTGTTGAAAACTGATGTCAAGCTGTTAAATGGCAACCATGAAAATGGAGATTTGGACCCAACCTCACCTTTGGAAAACATGGATTACATTAAAGACAAGGAAGAGGTGAATGGCATTGAAGAGATTTGTTTTGATCCTGAAGGAAGTAAAGCAGAATGGAAGGAAACACCCTGTATCCTAAGTGTTAATGTAAAAAACAAGCAGGATGATGATTTAAATTGTGAACCTTTGTCTCCCCATAATATAACTCCAGAACCAGTCTCTAAACTGCCTGCTGAACCAGTTTCTGGTGATCCAGCCCCTGGTGATCTGGATGCCGGAGATCCAGCCTCCGGAGTACTGGCCTCTGGTGATTCCACCTCTGGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAACCTCTGGTGATGCCCCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCTCCTCTGGTGATCCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGTGCCGCTGATGATATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCACTGATCCAGCCTCTGATGATCTGGCCTCTGGTGATCTATCCTCTAGTGAACTGGCCTCTGATGATCTGGCCACTGGTGAACTGGCCTCTGATGAGCTGACTTCTGAATCAACCTTTGATCGTACCTTTGAACCAAAGTCTGTACCAGTTTGTGAACCAGTTCCTGAAATTGACAATATAGAACCAAGTAGCAATAAAGATGATGATTTTCTTGAAAAAAATGGAGCTGATGAAAAATTAGAGCAAATTCAGAGTAAAGACTCATTGGATGAGAAAAATAAAGCTGATAATAATATTGATGCTAATGAAGAAACTCTAGAAACAGATGATACAACTATTTGTTCAGATCGACCTCCTGAAAATGAAAAGAAGGTAGAGGAAGATATTATCACAGAGCTTGCTCTTGGAGAAGATGCTATATCTAGCAGTATGGAAATTGACCAAGGTGAAAAGAATGAAGATGAAACTTCTGCAGATCTTGTAGAAACGATTAATGAAAATGTTATTGAAGATAACAAAAGTGAGAATATCTTAGAAAATACAGACTCTATGGAGACAGATGAAATCATTCCTATTTTGGAAAAGCTTGCACCTTCTGAGGATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCCAATCGATGAGACAAATCCAGATTTGGAAGAGAAAATGGAAAGTTCTTTTGGTTCACCATCTAAACAAGAAAGTAGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCTCTGATGAAGAGGATATTTCGGGTGAAAAAGATGAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCA
CircID chr12:14423909|14425473
ORF Type ORF2
Protein Length 248
Nucleotide Length 744
Protein Sequence LLLGSILSISGTGSQTGTDFGSKVRSKVDSEVSSSEASSPVARSSEASSLEDRSPEARSSEAGSVEAGAPEARSTEVISLEAISSAAQSPEMGSTGTGSPGMGSLEVGSPEERSSAVASPEVASPGDTSPEGASPEVASPEAASLEEGSLEVGSPEVESPEASTPEAGSPASRSPGAGSPETGSAGSLETGSGVILWGDKGSQFKSSSCLFFTLTLRIQGVSFHSALLPSGSKQISSMPFTSSLSLM*
Nucleotide Sequence TTGCTACTTGGTTCTATATTGTCAATTTCAGGAACTGGTTCACAAACTGGTACAGACTTTGGTTCAAAGGTACGATCAAAGGTTGATTCAGAAGTCAGCTCATCAGAGGCCAGTTCACCAGTGGCCAGATCATCAGAGGCCAGTTCACTAGAGGATAGATCACCAGAGGCCAGATCATCAGAGGCTGGATCAGTGGAAGCTGGTGCTCCAGAAGCCAGATCAACAGAAGTTATTTCACTAGAGGCTATATCATCAGCGGCACAATCACCAGAAATGGGTTCAACAGGGACCGGTTCACCTGGGATGGGATCACTAGAGGTGGGATCACCAGAGGAGAGATCATCAGCAGTGGCATCACCAGAGGTGGCATCACCAGGGGACACATCACCAGAAGGGGCATCACCAGAGGTTGCATCACCAGAGGCAGCATCACTAGAGGAGGGCTCGCTAGAGGTGGGATCACCAGAGGTGGAATCACCAGAGGCCAGTACTCCGGAGGCTGGATCTCCGGCATCCAGATCACCAGGGGCTGGATCACCAGAAACTGGTTCAGCAGGCAGTTTAGAGACTGGTTCTGGAGTTATATTATGGGGAGACAAAGGTTCACAATTTAAATCATCATCCTGCTTGTTTTTTACATTAACACTTAGGATACAGGGTGTTTCCTTCCATTCTGCTTTACTTCCTTCAGGATCAAAACAAATCTCTTCAATGCCATTCACCTCTTCCTTGTCTTTAATGTAA
CircID chr12:14423909|14425473
ORF Type ORF3
Protein Length 107
Nucleotide Length 321
Protein Sequence MISSVSIESVFSKIFSLLLSSITFSLIVSTRSAEVSSSFFSPWSISILLDIASSPRASSVIISSSTFFSFSGGRSEQIVVSSVSRVSSLASILLSALFFSSNESLL*
Nucleotide Sequence ATGATTTCATCTGTCTCCATAGAGTCTGTATTTTCTAAGATATTCTCACTTTTGTTATCTTCAATAACATTTTCATTAATCGTTTCTACAAGATCTGCAGAAGTTTCATCTTCATTCTTTTCACCTTGGTCAATTTCCATACTGCTAGATATAGCATCTTCTCCAAGAGCAAGCTCTGTGATAATATCTTCCTCTACCTTCTTTTCATTTTCAGGAGGTCGATCTGAACAAATAGTTGTATCATCTGTTTCTAGAGTTTCTTCATTAGCATCAATATTATTATCAGCTTTATTTTTCTCATCCAATGAGTCTTTACTCTGA
CircID chr12:14423909|14425473
ORF Type ORF4
Protein Length 90
Nucleotide Length 270
Protein Sequence MPEIQPPEYWPLVIPPLVIPPLASPPLVMLPLVMQPLVMPLLVMCPLVMPPLVMPLLMISPLVIPPLVIPSQVNRSLLNPFLVIVPLMI*
Nucleotide Sequence ATGCCGGAGATCCAGCCTCCGGAGTACTGGCCTCTGGTGATTCCACCTCTGGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAACCTCTGGTGATGCCCCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCTCCTCTGGTGATCCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGTGCCGCTGATGATATAG
CircID chr12:14423909|14425473
ORF Type ORF5
Protein Length 87
Nucleotide Length 261
Protein Sequence MKSFLFWKSLHLLRMNLLAFLKHLSFQSMRQIQIWKRKWKVLLVHHLNKKVVRVCQKKPFWSSLMKRIFRVKKMSLKLYRKMKRALQ
Nucleotide Sequence ATGAAATCATTCCTATTTTGGAAAAGCTTGCACCTTCTGAGGATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCCAATCGATGAGACAAATCCAGATTTGGAAGAGAAAATGGAAAGTTCTTTTGGTTCACCATCTAAACAAGAAAGTAGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCTCTGATGAAGAGGATATTTCGGGTGAAAAAGATGAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCAG
CircID chr12:14423909|14425473
ORF Type ORF6
Protein Length 74
Nucleotide Length 222
Protein Sequence MSLYSEFALIFHQLHFFQENHHLYCYLVLYCQFQELVHKLVQTLVQRYDQRLIQKSAHQRPVHQWPDHQRPVH*
Nucleotide Sequence ATGAGTCTTTACTCTGAATTTGCTCTAATTTTTCATCAGCTCCATTTTTTTCAAGAAAATCATCATCTTTATTGCTACTTGGTTCTATATTGTCAATTTCAGGAACTGGTTCACAAACTGGTACAGACTTTGGTTCAAAGGTACGATCAAAGGTTGATTCAGAAGTCAGCTCATCAGAGGCCAGTTCACCAGTGGCCAGATCATCAGAGGCCAGTTCACTAG
CircID chr12:14423909|14425473
ORF Type ORF7
Protein Length 39
Nucleotide Length 117
Protein Sequence MFSKGEVGSKSPFSWLPFNSLTSVFNSSSLTLYTASSC*
Nucleotide Sequence ATGTTTTCCAAAGGTGAGGTTGGGTCCAAATCTCCATTTTCATGGTTGCCATTTAACAGCTTGACATCAGTTTTCAACAGTTCTTCTTTGACCTTGTACACTGCTTCAAGTTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:14423909|14425473 U2AF2 6 2 0
chr12:14423909|14425473 MOV10 0 0 1
chr12:14423909|14425473 ELAVL1 6 5 7
chr12:14423909|14425473 RC3H1 0 0 1
chr12:14423909|14425473 PRPF8 0 3 1
chr12:14423909|14425473 UPF1 1 1 0
chr12:14423909|14425473 TAF15 0 1 0
chr12:14423909|14425473 FMR1 1 0 18
chr12:14423909|14425473 CPSF6 0 0 1
chr12:14423909|14425473 FUS 1 0 1
chr12:14423909|14425473 DGCR8 0 0 2
chr12:14423909|14425473 SRSF1 1 0 7
chr12:14423909|14425473 NOP58 1 2 12
chr12:14423909|14425473 SRSF3 0 1 0
chr12:14423909|14425473 U2AF1 0 0 1
chr12:14423909|14425473 NOP56 0 2 1
chr12:14423909|14425473 DDX54 1 0 27
chr12:14423909|14425473 RBM10 0 1 0
chr12:14423909|14425473 HNRNPM 1 0 0
chr12:14423909|14425473 PTBP1 2 0 0
chr12:14423909|14425473 HNRNPD 1 0 0
chr12:14423909|14425473 YWHAG 0 0 1
chr12:14423909|14425473 ZNF184 1 0 5
chr12:14423909|14425473 DDX3X 1 0 1
chr12:14423909|14425473 ZC3H7B 0 0 4
chr12:14423909|14425473 SMNDC1 0 0 2
chr12:14423909|14425473 ACIN1 0 0 1
chr12:14423909|14425473 RANGAP1 0 0 1
chr12:14423909|14425473 LIN28A 0 0 1
chr12:14423909|14425473 LIN28B 0 1 0
chr12:14423909|14425473 FXR1 0 1 11
chr12:14423909|14425473 FXR2 0 0 8
chr12:14423909|14425473 IGF2BP1 0 0 4
chr12:14423909|14425473 IGF2BP3 0 0 6
chr12:14423909|14425473 IGF2BP2 2 4 25
chr12:14423909|14425473 TARDBP 1 2 1
chr12:14423909|14425473 YTHDC1 0 0 1
chr12:14423909|14425473 BUD13 0 0 3
chr12:14423909|14425473 RBM47 1 0 6
chr12:14423909|14425473 SLTM 0 0 1
chr12:14423909|14425473 EIF4G2 0 0 1
chr12:14423909|14425473 CSTF2T 0 0 5
chr12:14423909|14425473 TRA2A 0 0 3
chr12:14423909|14425473 XRN2 0 0 1
chr12:14423909|14425473 FBL 1 0 12
chr12:14423909|14425473 AGO1 0 0 3
chr12:14423909|14425473 EIF4A3 1 1 9
chr12:14423909|14425473 AGO2 0 1 8
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab